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| Analyze gene-set | Analyze locus | Analyze orthologous gene-set |
GREAM enables user to analyze repeat element distribution using three different options
Figure 1: Input parameters of 'analyze gene-set' option Top
Figure 2: Analysis using sample gene-set Top
Figure 3a: Job status page showing processing status of the input and link to the output page Top
Figure 3a:Result of gene-set analysis (Table showing list of repetitive elements found in neighborhood region of one or more genes from given set along with statistical significance for their over-representation.) Top
Figure 4a: Visualizing distribution of specific repeat elements across neighborhood of given gene set Top
Figure 4b: Snapshot of repeat element distribution Top
Figure 5: Gene-wise report for given input set Top
Figure 6: Page showing information about specific repeat element Top
Figure 6: Gene ontology analysis of genes having specific repeat elements in thier neighborhood Top
Figure 7: Input parameters of 'analyze locus' option Top
Figure 8: Result of locus analysis Top
Figure 9: Input parameters of 'analyze orthologous gene-set' option Top
Figure 10: Analysis using sample gene-set Top
Figure 11: Result of orthologous gene-set analysis Top
Figure 12: Result of orthologous gene-set analysis [ A. Shows frequency of occurrance of repeat elements in submitted rat gene-set with statistical significance, B. Shows frequency of occurrance of repeat elements in the mouse orthologous gene-set with statistical significance, C. Shows frequency of occurance of repeat elements in the human orthologous gene-set with statistical significance and D. Shows repeat element commonly over-represented in the neighbouhood region of human, mouse and rat orthologous gene-sets. ] Top
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