BlastResult

Gene

Protein

Transcript

Blast result

Transcript specific probe-cluster

For Human genome U133 plus 2 array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
207885_at	*150*	*447*	*100.00*	25	6	30
	*770*	*141*	*100.00*	25	22	46
	*1084*	*795*	*100.00*	25	37	61
	*456*	*561*	*100.00*	25	*115*	*139*
	*998*	*499*	*100.00*	25	*166*	*190*
	*576*	*1055*	*100.00*	25	*182*	*206*
	*281*	*191*	*100.00*	25	*197*	*221*
	*1046*	*575*	*100.00*	25	*311*	*335*
	*164*	*403*	*100.00*	25	*338*	*362*
	49	*365*	*100.00*	25	*350*	*374*
	*929*	97	*100.00*	25	*374*	*398*
234715_at	1087	587	100.00	15	155	141
222021_x_at	1118	659	100.00	15	318	332
208594_x_at	500	1039	100.00	16	163	178
238449_at	46	1043	100.00	15	61	75
210752_s_at	409	745	100.00	15	357	343
218365_s_at	936	691	100.00	15	71	85
1562059_at	956	1077	100.00	15	72	86
242230_at	109	905	100.00	15	312	298
233474_at	1109	361	100.00	15	313	299

For Human genome U133 A 2 array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
207885_at	*419*	*263*	*100.00*	25	6	30
	*498*	77	*100.00*	25	22	46
	*497*	*475*	*100.00*	25	37	61
	*520*	*337*	*100.00*	25	*115*	*139*
	*295*	*295*	*100.00*	25	*166*	*190*
	*377*	*633*	*100.00*	25	*182*	*206*
	*400*	*107*	*100.00*	25	*197*	*221*
	*176*	*347*	*100.00*	25	*311*	*335*
	59	*231*	*100.00*	25	*338*	*362*
	*312*	*207*	*100.00*	25	*350*	*374*
	*342*	55	*100.00*	25	*374*	*398*
222021_x_at	295	397	100.00	15	318	332
208594_x_at	670	623	100.00	16	163	178
210752_s_at	419	443	100.00	15	357	343
218365_s_at	636	415	100.00	15	71	85

For Human genome U133 A array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
207885_at	*647*	*271*	*100.00*	25	6	30
	*160*	79	*100.00*	25	22	46
	*408*	*491*	*100.00*	25	37	61
	*316*	*349*	*100.00*	25	*115*	*139*
	*119*	*303*	*100.00*	25	*166*	*190*
	88	*653*	*100.00*	25	*182*	*206*
	*689*	*107*	*100.00*	25	*197*	*221*
	84	*359*	*100.00*	25	*311*	*335*
	*431*	*237*	*100.00*	25	*338*	*362*
	99	*213*	*100.00*	25	*350*	*374*
	*202*	57	*100.00*	25	*374*	*398*
222021_x_at	455	409	100.00	15	318	332
208594_x_at	499	643	100.00	16	163	178
210752_s_at	564	457	100.00	15	357	343
218365_s_at	450	429	100.00	15	71	85

For Human genome U133 B array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
234715_at	358	357	100.00	15	155	141
238449_at	626	637	100.00	15	61	75
242230_at	326	553	100.00	15	312	298
233474_at	352	215	100.00	15	313	299

For Human genome U95 Av2 array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
34612_at	*180*	*253*	*100.00*	25	*101*	*125*
	*528*	*177*	*100.00*	25	*117*	*141*
	40	*475*	*100.00*	25	*147*	*171*
	*402*	*327*	*100.00*	25	*159*	*183*
	*479*	91	*100.00*	25	*213*	*237*
	*338*	75	*100.00*	25	*280*	*304*
	*124*	*413*	*100.00*	25	*309*	*333*
	*282*	*191*	*100.00*	25	*339*	*363*
	*148*	*395*	*100.00*	25	*345*	*369*
	*130*	*323*	*100.00*	25	*351*	*375*
	*415*	*539*	*100.00*	25	*401*	*425*
	*469*	*383*	*100.00*	25	*405*	*429*
	12	*465*	*100.00*	25	39	63
	*540*	63	*100.00*	25	57	81
	*227*	85	*100.00*	25	69	93
	11	*599*	*100.00*	25	71	95
34414_at	400	219	95.00	20	112	93
41782_g_at	564	255	100.00	16	103	118

For Human genome U95 B array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
57175_at	427	443	100.00	15	106	92
57175_at	454	505	100.00	15	106	92
48969_at	292	133	100.00	15	29	15

For Human genome U95 C array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
61809_at	124	33	100.00	15	301	287
61809_at	122	35	100.00	15	301	287
58515_at	56	487	100.00	15	23	9
61291_at	186	353	100.00	15	318	332
60423_r_at	550	567	100.00	15	122	108
57681_at	214	395	100.00	15	337	351
50612_at	408	167	91.30	23	70	48
50315_at	41	539	100.00	15	258	272

For Human genome U95 D array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
74188_at	32	419	100.00	16	334	319
74188_at	245	191	100.00	16	334	319
86456_at	256	29	100.00	15	288	302
72403_at	493	77	100.00	15	173	159

For Human genome U95 E array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
70265_at	124	411	100.00	15	154	140
	77	333	100.00	16	154	139
	553	105	100.00	16	154	139

For Human genome focus array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
207885_at	25	*175*	*100.00*	25	6	30
	*140*	51	*100.00*	25	22	46
	*427*	*305*	*100.00*	25	37	61
	*317*	*221*	*100.00*	25	*115*	*139*
	*341*	*139*	*100.00*	25	*166*	*190*
	*382*	*411*	*100.00*	25	*182*	*206*
	*286*	71	*100.00*	25	*197*	*221*
	*300*	*225*	*100.00*	25	*311*	*335*
	*193*	*153*	*100.00*	25	*338*	*362*
	*410*	*135*	*100.00*	25	*350*	*374*
	*173*	39	*100.00*	25	*374*	*398*
222021_x_at	131	259	100.00	15	318	332
208594_x_at	413	227	100.00	16	163	178

For HT Human genome U133 plus PM array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
207885_PM_at	*644*	16	*100.00*	25	*115*	*139*
	*474*	89	*100.00*	25	*166*	*190*
	79	37	*100.00*	25	*182*	*206*
	*668*	*263*	*100.00*	25	6	30
	*241*	*734*	*100.00*	25	*197*	*221*
	*389*	*611*	*100.00*	25	*311*	*335*
	*474*	*409*	*100.00*	25	*338*	*362*
	*636*	*362*	*100.00*	25	*350*	*374*
	*125*	*388*	*100.00*	25	22	46
	*408*	*203*	*100.00*	25	*374*	*398*
	*636*	*461*	*100.00*	25	37	61
1562059_PM_at	314	525	100.00	15	72	86
208594_PM_x_at	490	575	100.00	16	163	178
210752_PM_s_at	636	602	100.00	15	357	343

For Human genome U133 X3P [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
g4757897_3p_at	82	*481*	*100.00*	25	*124*	*148*
	*495*	*579*	*100.00*	25	*150*	*174*
	*709*	*515*	*100.00*	25	*166*	*190*
	*120*	*1115*	*100.00*	25	*181*	*205*
	*152*	*217*	*100.00*	25	*197*	*221*
	*744*	*665*	*100.00*	25	*205*	*229*
	*441*	*321*	*100.00*	25	*307*	*331*
	*991*	*575*	*100.00*	25	*329*	*353*
	*617*	*757*	*100.00*	25	*340*	*364*
	*279*	*889*	*100.00*	25	*346*	*370*
	*562*	*295*	*100.00*	25	*373*	*397*
Hs.326785.0.S1_3p_at	232	595	100.00	15	155	141
	980	405	100.00	15	155	141
	195	631	100.00	15	155	141
	662	155	100.00	15	155	141
Hs.326785.0.S1_3p_x_at	233	595	100.00	15	155	141
	981	405	100.00	15	155	141
	661	155	100.00	15	155	141
g8215681_3p_at	50	973	100.00	16	238	223
g4503564_3p_at	182	439	100.00	15	309	295
g13027607_3p_at	779	825	100.00	15	147	161
Hs.151010.0.A1_3p_at	579	1085	100.00	15	384	370
Hs.331640.0.A1_3p_at	1032	1025	100.00	15	61	75
g11761691_3p_a_at	316	907	100.00	15	357	343
Hs.269812.0.S1_3p_at	487	483	100.00	15	313	299
Hs.224150.0.A1_3p_at	631	93	100.00	15	258	272
Hs.252433.0.S2_3p_at	355	743	100.00	15	283	269
Hs.59346.0.S1_3p_a_at	1137	685	100.00	15	71	85
208594_3p_x_at	597	1023	100.00	16	163	178

For HT human genome U133A array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
207885_at	*171*	*375*	*100.00*	25	*115*	*139*
	*525*	*313*	*100.00*	25	*166*	*190*
	*697*	*687*	*100.00*	25	*182*	*206*
	*646*	*295*	*100.00*	25	6	30
	*313*	*123*	*100.00*	25	*197*	*221*
	*229*	*385*	*100.00*	25	*311*	*335*
	*293*	*261*	*100.00*	25	*338*	*362*
	*372*	*239*	*100.00*	25	*350*	*374*
	26	95	*100.00*	25	22	46
	*472*	79	*100.00*	25	*374*	*398*
	*524*	*517*	*100.00*	25	37	61
222021_x_at	11	439	100.00	15	318	332
208594_x_at	188	371	100.00	16	163	178
210752_s_at	151	489	100.00	15	357	343
218365_s_at	388	439	100.00	15	71	85

For HT human genome U133B array [RefSeq ID: NM_004057.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
234715_at	240	358	100.00	15	155	141
238449_at	200	642	100.00	15	61	75
242230_at	380	558	100.00	15	312	298
233474_at	485	216	100.00	15	313	299