BlastResult

Gene

Protein

Transcript

Blast result

Transcript specific probe-cluster

For Human genome U133 plus 2 array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
206696_at	*837*	*517*	*100.00*	25	*1202*	*1226*
	*983*	*531*	*100.00*	25	*1231*	*1255*
	*367*	*145*	*100.00*	25	*1246*	*1270*
	49	*753*	*100.00*	25	*1261*	*1285*
	*396*	*225*	*100.00*	25	*1320*	*1344*
	10	*425*	*100.00*	25	*1388*	*1412*
	*682*	*1103*	*100.00*	25	*1420*	*1444*
	*656*	*955*	*100.00*	25	*1450*	*1474*
	*654*	*1017*	*100.00*	25	*1487*	*1511*
	*1146*	*373*	*100.00*	25	*1585*	*1609*
	*117*	*867*	*100.00*	25	*1615*	*1639*
218825_at	1078	389	100.00	15	1372	1386
218825_at	831	345	100.00	15	1372	1386
242156_at	219	1151	100.00	15	937	951
210883_x_at	786	315	100.00	16	1037	1052
236988_x_at	348	983	100.00	15	652	638
201316_at	758	825	100.00	15	1361	1347
211147_s_at	48	301	100.00	15	650	664
202808_at	577	323	100.00	15	1531	1517
1560136_at	657	1079	100.00	16	1128	1113
232195_at	898	959	100.00	17	1102	1086
1557613_at	15	575	94.74	19	1145	1163
208695_s_at	275	1115	100.00	15	1256	1270
221798_x_at	1051	1081	100.00	15	1139	1153
206211_at	702	469	100.00	15	1589	1603
211858_x_at	755	569	100.00	15	294	280
235855_at	435	321	100.00	15	490	476
232780_s_at	140	779	100.00	15	1259	1273
209755_at	503	691	100.00	15	523	509
205158_at	406	1151	100.00	15	1654	1640
229393_at	480	1153	100.00	15	1253	1267
203107_x_at	1052	1081	100.00	15	1139	1153
240116_at	852	419	100.00	15	183	197
230395_at	551	629	100.00	15	1409	1395
203799_at	761	167	100.00	15	934	948
206160_at	1026	79	100.00	15	1626	1640
236579_at	438	315	100.00	15	1447	1461
200890_s_at	819	361	95.00	20	1627	1608
1564785_at	94	1051	94.74	19	1022	1004
223941_at	665	837	100.00	16	956	941
212433_x_at	1053	1081	100.00	15	1139	1153
244196_at	962	617	95.24	21	1155	1135
237367_x_at	1157	755	100.00	16	1123	1138

For Human genome U133 A 2 array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
206696_at	*158*	*307*	*100.00*	25	*1202*	*1226*
	*124*	*321*	*100.00*	25	*1231*	*1255*
	*211*	81	*100.00*	25	*1246*	*1270*
	*331*	*449*	*100.00*	25	*1261*	*1285*
	*171*	*125*	*100.00*	25	*1320*	*1344*
	*594*	*245*	*100.00*	25	*1388*	*1412*
	20	*659*	*100.00*	25	*1420*	*1444*
	*712*	*571*	*100.00*	25	*1450*	*1474*
	*207*	*611*	*100.00*	25	*1487*	*1511*
	*616*	*211*	*100.00*	25	*1585*	*1609*
	*109*	*517*	*100.00*	25	*1615*	*1639*
218825_at	282	225	100.00	15	1372	1386
218825_at	381	195	100.00	15	1372	1386
210883_x_at	309	175	100.00	16	1037	1052
201316_at	46	493	100.00	15	1361	1347
211147_s_at	716	165	100.00	15	650	664
202808_at	135	179	100.00	15	1531	1517
208695_s_at	223	665	100.00	15	1256	1270
221798_x_at	390	645	100.00	15	1139	1153
211858_x_at	353	343	100.00	15	294	280
206211_at	637	279	100.00	15	1589	1603
209755_at	467	415	100.00	15	523	509
205158_at	472	667	100.00	15	1654	1640
203107_x_at	389	645	100.00	15	1139	1153
206160_at	210	47	100.00	15	1626	1640
203799_at	697	91	100.00	15	934	948
200890_s_at	9	205	95.00	20	1627	1608
212433_x_at	388	645	100.00	15	1139	1153

For Human genome U133 A array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
206696_at	*586*	*311*	*100.00*	25	*1202*	*1226*
	*659*	*329*	*100.00*	25	*1231*	*1255*
	*652*	81	*100.00*	25	*1246*	*1270*
	*254*	*465*	*100.00*	25	*1261*	*1285*
	59	*129*	*100.00*	25	*1320*	*1344*
	*118*	*255*	*100.00*	25	*1388*	*1412*
	*160*	*677*	*100.00*	25	*1420*	*1444*
	47	*591*	*100.00*	25	*1450*	*1474*
	*200*	*629*	*100.00*	25	*1487*	*1511*
	*273*	*217*	*100.00*	25	*1585*	*1609*
	15	*533*	*100.00*	25	*1615*	*1639*
218825_at	171	231	100.00	15	1372	1386
218825_at	409	201	100.00	15	1372	1386
210883_x_at	440	181	100.00	16	1037	1052
201316_at	645	507	100.00	15	1361	1347
211147_s_at	284	139	100.00	15	650	664
202808_at	85	185	100.00	15	1531	1517
208695_s_at	548	685	100.00	15	1256	1270
221798_x_at	477	665	100.00	15	1139	1153
211858_x_at	200	353	100.00	15	294	280
206211_at	518	285	100.00	15	1589	1603
209755_at	629	427	100.00	15	523	509
205158_at	541	701	100.00	15	1654	1640
203107_x_at	478	665	100.00	15	1139	1153
206160_at	564	47	100.00	15	1626	1640
203799_at	506	95	100.00	15	934	948
200890_s_at	64	211	95.00	20	1627	1608
212433_x_at	479	665	100.00	15	1139	1153

For Human genome U133 B array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
242156_at	559	703	100.00	15	937	951
236988_x_at	463	599	100.00	15	652	638
232195_at	422	587	100.00	17	1102	1086
235855_at	510	187	100.00	15	490	476
232780_s_at	576	469	100.00	15	1259	1273
229393_at	449	707	100.00	15	1253	1267
240116_at	655	251	100.00	15	183	197
230395_at	314	383	100.00	15	1409	1395
236579_at	278	187	100.00	15	1447	1461
223941_at	299	515	100.00	16	956	941
244196_at	213	377	95.24	21	1155	1135
237367_x_at	481	463	100.00	16	1123	1138

For Human genome U95 Av2 array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
36778_at	*577*	*625*	*100.00*	25	*1102*	*1126*
	*375*	*105*	*100.00*	25	*1180*	*1204*
	*292*	*239*	*100.00*	25	*1287*	*1311*
	*278*	23	*100.00*	25	*1298*	*1322*
	*239*	*155*	*100.00*	25	*1343*	*1367*
	66	*469*	*100.00*	25	*1374*	*1398*
	*225*	*405*	*100.00*	25	*1442*	*1466*
	*585*	*533*	*100.00*	25	*1490*	*1514*
	*251*	*191*	*100.00*	25	*1508*	*1532*
	*148*	*131*	*100.00*	25	*1544*	*1568*
	*149*	*131*	*100.00*	25	*1546*	*1570*
	56	*259*	*100.00*	25	*1581*	*1605*
	*301*	*169*	*100.00*	25	*1586*	*1610*
	*175*	*121*	*100.00*	25	*1592*	*1616*
	*446*	*111*	*100.00*	25	*1610*	*1634*
	*374*	*119*	*100.00*	25	*1643*	*1667*
32090_at	473	527	100.00	15	523	509
	291	289	100.00	15	523	509
	141	419	100.00	15	523	509
31381_at	162	103	100.00	15	299	285
31381_at	163	103	100.00	15	299	285
41362_at	253	31	100.00	15	1498	1484
37003_at	521	89	100.00	15	1084	1098
40286_r_at	556	535	100.00	17	1649	1665
41842_at	25	511	100.00	15	662	676
441_s_at	475	321	94.74	19	747	765
32677_at	172	23	100.00	15	216	202
265_s_at	20	585	100.00	15	1589	1603

For Human genome U95 B array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
56201_at	11	505	100.00	15	1253	1267
56201_at	360	339	100.00	15	1253	1267
43605_at	516	165	100.00	15	752	766
46211_at	537	41	100.00	15	529	543
41888_at	105	293	100.00	15	1266	1280

For Human genome U95 C array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
61767_at	77	249	100.00	15	398	384
	249	431	100.00	15	398	384
	213	175	100.00	15	398	384
59827_at	587	377	100.00	16	763	748
59827_at	589	531	100.00	16	763	748
66127_at	447	599	100.00	16	751	766
49093_at	622	439	100.00	15	992	1006
63224_at	158	543	100.00	16	1071	1056
65442_at	368	267	100.00	16	750	765
59158_at	586	491	100.00	15	543	529

For Human genome U95 D array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
75899_r_at	605	251	100.00	15	1018	1032
75899_r_at	521	561	100.00	15	1018	1032
72866_at	508	537	100.00	15	1193	1207
72866_at	469	147	100.00	15	1193	1207
91674_at	472	427	100.00	15	539	553
85351_at	248	103	100.00	15	1412	1426
76245_at	509	25	100.00	15	996	982
75897_i_at	382	339	100.00	15	1018	1032
81685_at	583	425	100.00	15	645	659
74108_at	486	125	100.00	16	378	363

For Human genome U95 E array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
67984_at	146	305	100.00	15	1530	1544
67984_at	223	275	100.00	15	1530	1544
81600_at	26	617	94.74	19	1571	1553
81600_at	620	301	95.00	20	1571	1552
69533_at	128	85	100.00	15	1447	1461
69533_at	227	119	100.00	15	1447	1461
78584_r_at	358	219	100.00	15	959	945
88662_r_at	573	507	100.00	15	77	63
85342_at	548	537	100.00	16	836	821
88895_at	151	521	94.74	19	1400	1418
79329_at	370	57	94.74	19	1005	987
87194_r_at	145	367	100.00	15	1331	1345
72511_at	219	23	100.00	16	1637	1622
90953_at	419	543	100.00	15	798	812
68841_at	109	165	100.00	16	1056	1041
80899_at	565	31	100.00	15	1331	1317

For Human genome focus array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
206696_at	*132*	*201*	*100.00*	25	*1202*	*1226*
	*358*	*209*	*100.00*	25	*1231*	*1255*
	*213*	55	*100.00*	25	*1246*	*1270*
	*326*	*293*	*100.00*	25	*1261*	*1285*
	*301*	83	*100.00*	25	*1320*	*1344*
	*389*	*163*	*100.00*	25	*1388*	*1412*
	*235*	*427*	*100.00*	25	*1420*	*1444*
	*365*	*371*	*100.00*	25	*1450*	*1474*
	*424*	*397*	*100.00*	25	*1487*	*1511*
	35	*141*	*100.00*	25	*1585*	*1609*
	*207*	*335*	*100.00*	25	*1615*	*1639*
218825_at	385	145	100.00	15	1372	1386
218825_at	429	119	100.00	15	1372	1386
208695_s_at	119	423	100.00	15	1256	1270
206211_at	408	185	100.00	15	1589	1603
205158_at	58	443	100.00	15	1654	1640
206160_at	391	31	100.00	15	1626	1640

For HT Human genome U133 plus PM array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
206696_PM_at	44	45	*100.00*	25	*1202*	*1226*
	*165*	*576*	*100.00*	25	*1231*	*1255*
	*266*	*484*	*100.00*	25	*1246*	*1270*
	*532*	*275*	*100.00*	25	*1261*	*1285*
	*250*	35	*100.00*	25	*1320*	*1344*
	12	*427*	*100.00*	25	*1388*	*1412*
	*486*	*460*	*100.00*	25	*1420*	*1444*
	*397*	*155*	*100.00*	25	*1450*	*1474*
	*603*	*595*	*100.00*	25	*1487*	*1511*
	*506*	*601*	*100.00*	25	*1585*	*1609*
	*579*	*201*	*100.00*	25	*1615*	*1639*
212433_PM_x_at	25	191	100.00	15	1139	1153
203799_PM_at	183	631	100.00	15	934	948
1564785_PM_at	198	306	94.74	19	1022	1004
208695_PM_s_at	506	553	100.00	15	1256	1270
209755_PM_at	325	720	100.00	15	523	509
211147_PM_s_at	679	517	100.00	15	650	664
206211_PM_at	303	449	100.00	15	1589	1603
1560136_PM_at	334	130	100.00	16	1128	1113
202808_PM_at	49	129	100.00	15	1531	1517
206160_PM_at	689	482	100.00	15	1626	1640
200890_PM_s_at	448	520	95.00	20	1627	1608
205158_PM_at	550	539	100.00	15	1654	1640
203107_PM_x_at	26	191	100.00	15	1139	1153
1557613_PM_at	420	574	94.74	19	1145	1163
201316_PM_at	462	629	100.00	15	1361	1347

For Human genome U133 X3P [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
g4557806_3p_at	*212*	*453*	*100.00*	25	*1388*	*1412*
	*1135*	*1029*	*100.00*	25	*1422*	*1446*
	47	*485*	*100.00*	25	*1443*	*1467*
	*1127*	*1145*	*100.00*	25	*1481*	*1505*
	*1053*	*631*	*100.00*	25	*1500*	*1524*
	20	*835*	*100.00*	25	*1529*	*1553*
	*959*	*217*	*100.00*	25	*1548*	*1572*
	*441*	*991*	*100.00*	25	*1584*	*1608*
	*1144*	*493*	*100.00*	25	*1599*	*1623*
	30	*851*	*100.00*	25	*1615*	*1639*
	*530*	*293*	*100.00*	25	*1639*	*1663*
Hs.182426.2.S1_3p_x_at	1011	93	100.00	15	1139	1153
	482	833	100.00	15	1139	1153
	1083	645	100.00	15	1139	1153
	789	117	100.00	15	1139	1153
	347	699	100.00	15	1139	1153
g7705888_3p_at	1085	261	100.00	15	1372	1386
	1133	207	100.00	15	1372	1386
	530	61	100.00	15	1372	1386
	968	949	100.00	15	1372	1386
Hs.14411.0.A1_3p_at	620	363	100.00	15	1409	1395
Hs.14411.0.A1_3p_at	723	429	100.00	15	1409	1395
g12654388_3p_a_at	479	19	100.00	15	1256	1270
g12654388_3p_a_at	393	1065	100.00	15	1256	1270
g1314276_3p_a_at	700	161	100.00	15	1498	1484
Hs.146986.0.A1_3p_at	488	507	100.00	15	136	150
g9858830_3p_a_at	203	1027	100.00	15	796	810
Hs.77515.2.S1_3p_at	681	139	100.00	15	1132	1118
g4506858_3p_s_at	544	869	94.74	19	1056	1038
Hs.175681.0.S1_3p_at	947	503	100.00	15	1274	1260
g12620199_3p_at	535	685	100.00	15	523	509
Hs.208109.0.A1_3p_at	740	621	95.24	21	1155	1135
g6469323_3p_a_at	982	335	100.00	15	650	664
g8923300_3p_at	258	263	100.00	15	865	879
Hs2.434315.1.S1_3p_at	989	805	100.00	15	582	568
Hs.20879.1.S1_3p_a_at	689	771	100.00	15	1259	1273
Hs.181309.0.S2_3p_at	124	277	100.00	15	1361	1347
g4506718_3p_x_at	1010	93	100.00	15	1139	1153
Hs.103483.0.A1_3p_at	1128	1153	100.00	15	1253	1267
Hs2.278221.1.S1_3p_at	270	855	94.74	19	738	756
g8924031_3p_at	1073	689	100.00	15	1571	1557
Hs.257714.0.A1_3p_at	239	1145	100.00	15	937	951
203107_3p_x_at	1059	1067	100.00	15	1139	1153
g5702193_3p_a_at	794	97	100.00	15	1560	1574
Hs.59728.0.A1_3p_at	873	487	100.00	17	1665	1649
Hs.248015.0.S1_3p_at	743	355	100.00	15	1111	1125
Hs.166913.0.A1_3p_s_at	100	885	100.00	15	1123	1137
g9966902_3p_at	313	707	100.00	15	885	899
Hs.154188.0.A1_3p_at	218	151	100.00	15	490	476
g6650791_RC_3p_at	860	487	95.00	20	630	611

For HT human genome U133A array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
206696_at	*265*	*341*	*100.00*	25	*1202*	*1226*
	*503*	*355*	*100.00*	25	*1231*	*1255*
	*335*	99	*100.00*	25	*1246*	*1270*
	43	*495*	*100.00*	25	*1261*	*1285*
	*549*	*147*	*100.00*	25	*1320*	*1344*
	*673*	*279*	*100.00*	25	*1388*	*1412*
	*680*	*717*	*100.00*	25	*1420*	*1444*
	*262*	*623*	*100.00*	25	*1450*	*1474*
	*548*	*661*	*100.00*	25	*1487*	*1511*
	*626*	*243*	*100.00*	25	*1585*	*1609*
	*685*	*557*	*100.00*	25	*1615*	*1639*
218825_at	538	245	100.00	15	1372	1386
218825_at	670	225	100.00	15	1372	1386
210883_x_at	139	203	100.00	16	1037	1052
201316_at	274	487	100.00	15	1361	1347
211147_s_at	75	191	100.00	15	650	664
202808_at	520	209	100.00	15	1531	1517
208695_s_at	315	659	100.00	15	1256	1270
221798_x_at	428	693	100.00	15	1139	1153
211858_x_at	550	383	100.00	15	294	280
206211_at	245	311	100.00	15	1589	1603
209755_at	634	455	100.00	15	523	509
205158_at	304	719	100.00	15	1654	1640
203107_x_at	429	693	100.00	15	1139	1153
206160_at	38	67	100.00	15	1626	1640
203799_at	686	117	100.00	15	934	948
200890_s_at	269	233	95.00	20	1627	1608
212433_x_at	427	693	100.00	15	1139	1153

For HT human genome U133B array [RefSeq ID: NM_000273.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
242156_at	559	710	100.00	15	937	951
236988_x_at	673	570	100.00	15	652	638
232195_at	549	594	100.00	17	1102	1086
235855_at	401	192	100.00	15	490	476
232780_s_at	406	484	100.00	15	1259	1273
229393_at	542	714	100.00	15	1253	1267
240116_at	99	250	100.00	15	183	197
230395_at	143	388	100.00	15	1409	1395
236579_at	524	188	100.00	15	1447	1461
223941_at	550	518	100.00	16	956	941
244196_at	91	382	95.24	21	1155	1135
237367_x_at	82	458	100.00	16	1123	1138