BlastResult

Gene

Protein

Transcript

Blast result

Transcript specific probe-cluster

For Human genome U133 plus 2 array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
223962_at	*171*	*737*	*100.00*	25	*1297*	*1321*
	*953*	*837*	*100.00*	25	*1329*	*1353*
	*890*	*629*	*100.00*	25	*1383*	*1407*
	*327*	*1083*	*100.00*	25	*1472*	*1496*
	*100*	*235*	*100.00*	25	*1500*	*1524*
	*557*	*179*	*100.00*	25	*1534*	*1558*
	*270*	*113*	*100.00*	25	*1559*	*1583*
	216	725	100.00	21	1621	1641
	*690*	*211*	*100.00*	25	*1654*	*1678*
	*592*	*123*	*100.00*	25	*1686*	*1710*
	*433*	*745*	*100.00*	25	*1699*	*1723*
1564662_at	652	281	100.00	15	897	911
1564662_at	387	109	100.00	15	897	911
221550_at	410	423	100.00	15	395	381
221550_at	830	103	100.00	15	395	381
205687_at	713	573	100.00	16	1050	1065
218131_s_at	298	1021	94.74	19	1660	1642
215273_s_at	951	461	100.00	15	1032	1018
212557_at	930	1017	100.00	15	221	235
202875_s_at	120	159	100.00	15	652	666
242575_at	967	997	100.00	15	1192	1206
232933_at	942	937	100.00	15	557	543
223946_at	727	673	100.00	15	1715	1701
244366_at	743	139	100.00	15	1195	1209
236903_at	398	327	100.00	16	1076	1061
1557827_at	115	57	100.00	15	772	758
212704_at	1005	1053	100.00	15	975	961
239612_at	416	849	95.24	21	1165	1145
230682_x_at	166	745	100.00	15	557	571
216396_s_at	660	1085	100.00	15	969	955
224271_x_at	98	851	100.00	17	602	618
241586_at	1067	979	100.00	15	819	833
231341_at	583	459	100.00	17	545	529
212121_at	541	985	100.00	16	1053	1068
222505_at	946	663	100.00	15	1611	1597
201322_at	565	141	94.74	19	1578	1560
221772_s_at	662	1027	100.00	16	10	25
237802_at	842	307	100.00	15	1574	1588

For Human genome U133 A 2 array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
221550_at	214	245	100.00	15	395	381
221550_at	228	57	100.00	15	395	381
205687_at	368	345	100.00	16	1050	1065
218131_s_at	35	613	94.74	19	1660	1642
215273_s_at	84	275	100.00	15	1032	1018
212557_at	284	611	100.00	15	221	235
202875_s_at	354	89	100.00	15	652	666
212704_at	119	633	100.00	15	975	961
216396_s_at	675	647	100.00	15	969	955
212121_at	9	589	100.00	16	1053	1068
201322_at	26	77	94.74	19	1578	1560
221772_s_at	380	617	100.00	16	10	25

For Human genome U133 A array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
221550_at	336	253	100.00	15	395	381
221550_at	321	23	100.00	15	395	381
205687_at	464	355	100.00	16	1050	1065
218131_s_at	537	631	94.74	19	1660	1642
215273_s_at	421	281	100.00	15	1032	1018
212557_at	94	629	100.00	15	221	235
202875_s_at	523	91	100.00	15	652	666
212704_at	379	651	100.00	15	975	961
216396_s_at	239	669	100.00	15	969	955
212121_at	424	607	100.00	16	1053	1068
201322_at	687	79	94.74	19	1578	1560
221772_s_at	398	635	100.00	16	10	25

For Human genome U133 B array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
223962_at	*233*	*451*	*100.00*	25	*1297*	*1321*
	*117*	*513*	*100.00*	25	*1329*	*1353*
	23	*383*	*100.00*	25	*1383*	*1407*
	*559*	*663*	*100.00*	25	*1472*	*1496*
	*275*	*139*	*100.00*	25	*1500*	*1524*
	52	*105*	*100.00*	25	*1534*	*1558*
	*400*	65	*100.00*	25	*1559*	*1583*
	682	443	100.00	21	1621	1641
	34	*125*	*100.00*	25	*1654*	*1678*
	*255*	73	*100.00*	25	*1686*	*1710*
	*259*	*457*	*100.00*	25	*1699*	*1723*
242575_at	565	609	100.00	15	1192	1206
232933_at	130	575	100.00	15	557	543
223946_at	211	411	100.00	15	1715	1701
244366_at	623	61	100.00	15	1195	1209
236903_at	17	195	100.00	16	1076	1061
239612_at	287	521	95.24	21	1165	1145
230682_x_at	536	457	100.00	15	557	571
224271_x_at	541	523	100.00	17	602	618
241586_at	508	599	100.00	15	819	833
231341_at	622	277	100.00	17	545	529
222505_at	686	403	100.00	15	1611	1597
237802_at	27	179	100.00	15	1574	1588

For Human genome U95 Av2 array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1669_at	609	485	100.00	16	977	992
1669_at	468	611	100.00	16	977	992
102_at	623	497	95.24	21	1343	1363
102_at	511	609	100.00	15	1349	1363
41572_r_at	410	601	100.00	15	1246	1232
35067_at	5	201	100.00	15	1609	1623
33518_f_at	214	303	100.00	15	157	171
32882_at	157	447	100.00	15	1491	1477
40700_at	487	545	100.00	16	1363	1348
40811_at	144	261	100.00	15	221	235
40217_s_at	630	295	100.00	15	722	736

For Human genome U95 B array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
49048_at	*392*	*439*	*100.00*	25	*1311*	*1335*
	62	*133*	*100.00*	25	*1356*	*1380*
	91	*239*	*100.00*	25	*1434*	*1458*
	89	*351*	*100.00*	25	*1440*	*1464*
	67	*141*	*100.00*	25	*1446*	*1470*
	*200*	*253*	*100.00*	25	*1470*	*1494*
	57	*361*	*100.00*	25	*1500*	*1524*
	*612*	*267*	*100.00*	25	*1530*	*1554*
	*269*	43	*100.00*	25	*1536*	*1560*
	70	*417*	*100.00*	25	*1566*	*1590*
	*462*	99	*100.00*	25	*1596*	*1620*
	*476*	*435*	*100.00*	25	*1614*	*1638*
	*564*	*449*	*100.00*	25	*1619*	*1643*
	*101*	*265*	*100.00*	25	*1684*	*1708*
	*397*	*515*	*100.00*	25	*1704*	*1728*
	*379*	33	*100.00*	25	*1710*	*1734*
44519_at	281	187	100.00	15	1131	1117
	355	95	100.00	15	1131	1117
	388	347	100.00	15	1131	1117
	419	1	100.00	15	1131	1117
50383_s_at	402	183	100.00	15	1524	1510
50383_s_at	392	179	100.00	15	1524	1510
49470_at	231	533	100.00	16	1591	1606
49470_at	58	603	100.00	17	1591	1607
47381_at	340	185	100.00	16	1355	1370
43309_at	391	259	100.00	15	940	926
50882_r_at	199	207	100.00	15	1678	1664
58323_at	37	319	100.00	15	223	209
49390_at	520	89	100.00	15	1090	1076
50853_at	115	571	100.00	15	1667	1653
48481_at	584	377	94.74	19	533	551

For Human genome U95 C array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
58595_f_at	120	103	94.74	19	1101	1083
	119	103	94.74	19	1101	1083
	524	419	94.74	19	1101	1083
60292_at	311	49	95.24	21	1165	1145
60292_at	282	95	95.00	20	1164	1145
52898_at	530	63	100.00	15	355	341
65124_at	519	293	100.00	15	768	754
66353_at	238	579	100.00	15	80	66
48657_at	162	387	100.00	15	10	24
62087_at	290	567	100.00	15	829	815
53356_r_at	398	583	100.00	15	1259	1273
61907_at	314	151	100.00	15	310	324
53955_at	237	533	100.00	15	1075	1061
61579_at	583	223	100.00	16	304	289
56816_at	84	93	100.00	16	388	373

For Human genome U95 D array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
79128_r_at	195	431	100.00	15	767	781
	30	629	100.00	15	767	781
	432	255	100.00	15	767	781
	269	571	100.00	15	767	781
79126_i_at	194	431	100.00	15	767	781
	533	167	100.00	15	767	781
	268	571	100.00	15	767	781
67884_at	196	271	100.00	15	536	550
	92	453	100.00	15	536	550
	168	67	100.00	15	536	550
84715_at	58	45	100.00	15	1225	1211
91248_at	22	325	100.00	15	1338	1324
85372_r_at	314	175	100.00	15	1211	1197
84917_at	67	455	100.00	15	1715	1701
79725_at	535	125	100.00	15	1211	1225

For Human genome U95 E array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
76777_s_at	511	19	100.00	16	1573	1588
	510	19	100.00	16	1573	1588
	169	241	100.00	16	1573	1588
	196	195	100.00	16	1573	1588
	224	227	100.00	16	1573	1588
	147	169	100.00	16	1573	1588
	268	99	100.00	16	1573	1588
	269	99	100.00	16	1573	1588
	105	537	100.00	16	1573	1588
	74	609	100.00	16	1573	1588
	303	253	100.00	15	1574	1588
76575_at	251	625	100.00	15	529	543
	473	429	100.00	17	529	545
	448	475	100.00	17	529	545
83040_at	465	109	100.00	16	1361	1346
83040_at	304	143	100.00	16	1361	1346
71608_r_at	549	23	100.00	15	251	237
71608_r_at	408	291	100.00	15	251	237
68363_at	376	167	100.00	15	1582	1568
85366_at	331	217	100.00	16	1126	1141
87700_at	22	535	100.00	16	951	936
73998_at	202	389	100.00	15	1387	1373
80314_at	575	555	100.00	15	920	934
79382_at	36	163	100.00	15	1195	1209
72956_at	256	347	100.00	16	1694	1679
67461_at	271	195	100.00	15	553	567
80939_at	388	129	100.00	15	662	648
85842_at	391	365	100.00	15	548	534
76539_g_at	82	415	100.00	15	1192	1206
77247_at	472	175	100.00	15	916	902

For Human genome focus array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
205687_at	100	227	100.00	16	1050	1065
215273_s_at	24	181	100.00	15	1032	1018
201322_at	23	53	94.74	19	1578	1560

For HT Human genome U133 plus PM array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
212557_PM_at	728	113	100.00	15	221	235
212704_PM_at	73	239	100.00	15	975	961
205687_PM_at	40	237	100.00	16	1050	1065
1557827_PM_at	451	407	100.00	15	772	758
1564662_PM_at	363	634	100.00	15	897	911
201322_PM_at	599	418	94.74	19	1578	1560

For Human genome U133 X3P [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
g13517942_3p_at	*979*	*649*	*100.00*	25	*1476*	*1500*
	*841*	*815*	*100.00*	25	*1530*	*1554*
	*180*	*583*	*100.00*	25	*1539*	*1563*
	*941*	*425*	*100.00*	25	*1555*	*1579*
	*267*	*345*	*100.00*	25	*1574*	*1598*
	*316*	*197*	*100.00*	25	*1597*	*1621*
	894	721	100.00	21	1621	1641
	*959*	*239*	*100.00*	25	*1654*	*1678*
	*977*	*139*	*100.00*	25	*1686*	*1710*
	*586*	*737*	*100.00*	25	*1699*	*1723*
Hs2.348523.1.S1_3p_at	1141	1119	100.00	15	897	911
	88	1017	100.00	15	897	911
	737	331	100.00	15	897	911
	632	317	100.00	15	897	911
	554	45	100.00	15	897	911
	265	1007	100.00	15	897	911
	691	125	100.00	15	897	911
	982	671	100.00	15	897	911
	851	49	100.00	15	897	911
Hs2.348523.1.S1_3p_x_at	738	331	100.00	15	897	911
	633	317	100.00	15	897	911
	690	125	100.00	15	897	911
Hs.70500.0.S1_3p_at	585	1009	100.00	15	1203	1217
	423	355	100.00	15	1203	1217
	51	175	100.00	15	1203	1217
1564662_3p_at	631	317	100.00	15	897	911
1564662_3p_at	689	125	100.00	15	897	911
Hs.90786.4.S1_3p_x_at	498	739	100.00	15	557	571
Hs2.132563.1.A1_3p_at	571	1061	100.00	15	1440	1454
Hs.70500.0.S1_3p_x_at	52	175	100.00	15	1203	1217
g4504340_3p_at	140	291	100.00	15	1002	1016
Hs2.438476.1.S1_3p_at	230	65	100.00	15	772	758
Hs.108642.0.S2_3p_at	530	725	94.74	19	380	362
Hs.78202.1.S1_3p_a_at	1106	311	100.00	15	826	812
Hs2.183593.2.A1_3p_s_at	779	799	100.00	15	1160	1146
Hs2.190125.2.A1_3p_s_at	835	447	100.00	16	18	33
Hs.283198.0.A1_3p_at	334	1057	100.00	15	819	833
Hs2.336954.1.S1_3p_at	745	905	100.00	15	1172	1158
Hs.109087.0.S2_3p_at	262	329	100.00	16	1118	1103
Hs.159526.0.S3_3p_at	755	255	100.00	15	1224	1210
Hs.149740.0.S1_3p_a_at	787	159	100.00	15	827	841
Hs.128688.0.A1_3p_at	470	375	94.74	19	323	305
Hs.85752.1.S1_3p_a_at	951	351	100.00	16	10	25
Hs2.380891.2.S1_3p_a_at	252	973	100.00	15	1573	1587
Hs.171003.0.A1_3p_at	863	461	100.00	15	1211	1197
g4758993_3p_x_at	511	907	100.00	16	1122	1107
g7706682_3p_at	186	337	100.00	15	537	551
Hs.286027.3.S1_3p_a_at	1011	545	100.00	15	969	955
g4502756_3p_a_at	299	649	100.00	15	719	733
Hs.90786.4.S1_3p_a_at	1009	977	100.00	15	557	571
g11038631_3p_at	264	437	100.00	16	202	187
Hs.12413.0.S1_3p_at	179	327	100.00	15	975	961
Hs.181185.0.S1_3p_at	1072	495	100.00	16	1053	1068
g4406345_3p_a_at	593	487	100.00	17	951	935
Hs.126506.0.A1_3p_at	1122	193	100.00	15	1387	1373
Hs2.434148.1.S1_3p_at	905	1159	100.00	15	318	304
g12803156_3p_at	612	451	100.00	15	395	381
Hs.192269.0.A1_3p_at	1051	157	100.00	15	1195	1209

For HT human genome U133A array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
221550_at	261	281	100.00	15	395	381
221550_at	374	75	100.00	15	395	381
218131_s_at	79	609	94.74	19	1660	1642
215273_s_at	200	309	100.00	15	1032	1018
202875_s_at	193	115	100.00	15	652	666
212704_at	484	677	100.00	15	975	961
201322_at	720	81	94.74	19	1578	1560
221772_s_at	667	667	100.00	16	10	25
205687_at	309	385	100.00	16	1050	1065
212557_at	135	665	100.00	15	221	235
216396_s_at	504	707	100.00	15	969	955
212121_at	672	643	100.00	16	1053	1068

For HT human genome U133B array [RefSeq ID: NM_031956.2]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
223962_at	*635*	*378*	*100.00*	25	*1297*	*1321*
	*477*	*520*	*100.00*	25	*1329*	*1353*
	*676*	*388*	*100.00*	25	*1383*	*1407*
	*605*	*666*	*100.00*	25	*1472*	*1496*
	37	*136*	*100.00*	25	*1500*	*1524*
	*110*	*104*	*100.00*	25	*1534*	*1558*
	*383*	16	*100.00*	25	*1559*	*1583*
	618	300	100.00	21	1621	1641
	*590*	*124*	*100.00*	25	*1654*	*1678*
	*231*	74	*100.00*	25	*1686*	*1710*
	*140*	*460*	*100.00*	25	*1699*	*1723*
232933_at	505	580	100.00	15	557	543
236903_at	101	196	100.00	16	1076	1061
230682_x_at	319	462	100.00	15	557	571
222505_at	98	410	100.00	15	1611	1597
242575_at	405	616	100.00	15	1192	1206
223946_at	416	416	100.00	15	1715	1701
244366_at	587	82	100.00	15	1195	1209
239612_at	715	526	95.24	21	1165	1145
224271_x_at	361	528	100.00	17	602	618
241586_at	5	604	100.00	15	819	833
231341_at	662	276	100.00	17	545	529
237802_at	743	180	100.00	15	1574	1588