BlastResult

Gene

Protein

Transcript

Blast result

Transcript specific probe-cluster

For Rat Genome U34 A [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
J02669_s_at	*128*	49	*100.00*	25	*1059*	*1083*
	*129*	49	*100.00*	25	*1078*	*1102*
	*130*	49	*100.00*	25	*1081*	*1105*
	*131*	49	*100.00*	25	*1085*	*1109*
	*132*	49	*100.00*	25	*1091*	*1115*
	*133*	49	*100.00*	25	*1094*	*1118*
	*134*	49	*100.00*	25	*1098*	*1122*
	*135*	49	*100.00*	25	*1101*	*1125*
	*136*	49	*100.00*	25	*1103*	*1127*
	*137*	49	*100.00*	25	*1108*	*1132*
	*138*	49	*100.00*	25	*1110*	*1134*
	*139*	49	*100.00*	25	*1112*	*1136*
	*140*	49	*100.00*	25	*1123*	*1147*
	*141*	49	*100.00*	25	*1125*	*1149*
	*142*	49	*100.00*	25	*1127*	*1151*
	*143*	49	*100.00*	25	*1463*	*1487*
J04187_at	*103*	35	*100.00*	25	*1670*	*1694*
	*104*	35	*100.00*	25	*1676*	*1700*
	*105*	35	*100.00*	25	*1700*	*1724*
	*106*	35	*100.00*	25	*1706*	*1730*
	*107*	35	*100.00*	25	*1718*	*1742*
	*108*	35	*100.00*	25	*1760*	*1784*
	*109*	35	*100.00*	25	*1766*	*1790*
	*110*	35	*100.00*	25	*1868*	*1892*
	*111*	35	*100.00*	25	*1874*	*1898*
	*112*	35	*100.00*	25	*1994*	*2018*
	*113*	35	*100.00*	25	*2000*	*2024*
	*114*	35	*100.00*	25	*2006*	*2030*
	*115*	35	*100.00*	25	*2018*	*2042*
	*116*	35	*100.00*	25	*2186*	*2210*
	*117*	35	*100.00*	25	*2198*	*2222*
	*118*	35	*100.00*	25	*2204*	*2228*
AJ132230_g_at	18	103	100.00	15	20	34
AJ010828_at	141	101	100.00	16	1619	1604
D17349cds_f_at	331	25	100.00	15	1244	1258
E12181cds_s_at	13	205	94.74	19	26	44
X76724_at	293	259	100.00	15	1594	1608
M13234cds_f_at	243	31	100.00	15	1244	1258
rc_AA942751_s_at	367	309	100.00	17	1769	1753
rc_AI638940_at	97	269	100.00	16	1044	1029
L08493cds_s_at	61	125	100.00	15	1496	1482

For Rat Genome U34 B [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
rc_AA957010_at	184	197	100.00	16	1761	1776
rc_AA957010_at	185	197	100.00	16	1761	1776
rc_AI044324_at	477	431	100.00	15	2224	2210
rc_AI044324_at	478	431	100.00	15	2224	2210
rc_AA955322_at	128	171	100.00	16	409	424
rc_AA955322_at	129	171	100.00	16	409	424
rc_AA998044_at	69	273	100.00	15	615	601
rc_AA944301_at	57	95	100.00	15	1381	1367
rc_AA899844_at	324	57	100.00	16	1856	1841
rc_AA957624_at	362	205	100.00	15	1292	1306
rc_AA848994_at	394	11	94.74	19	598	616
rc_AI013271_at	280	363	100.00	15	728	742
rc_AA850894_at	460	33	100.00	15	968	982

For Rat Genome U34 C [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
rc_AI102745_at	454	129	100.00	15	1073	1059
rc_AI102745_at	455	129	100.00	15	1073	1059
rc_AI102760_at	248	169	100.00	15	1757	1771
rc_AI102760_at	249	169	100.00	16	1757	1772
rc_AI179366_at	30	325	100.00	15	546	560
rc_AI227737_at	455	343	94.74	19	1502	1484
rc_AI233944_at	262	443	94.74	19	303	285
rc_AI176810_at	454	281	100.00	15	169	183
rc_AI228254_at	516	353	100.00	17	2195	2179
rc_AI176647_at	221	279	100.00	15	979	965

For Rat Genome 230 2.0 [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1369275_s_at	*229*	*229*	*100.00*	25	*1083*	*1107*
	*713*	*811*	*100.00*	25	*1089*	*1113*
	*262*	*323*	*100.00*	25	*1102*	*1126*
	*234*	*573*	*100.00*	25	*1107*	*1131*
	73	*491*	*100.00*	25	*1122*	*1146*
	*305*	*115*	*100.00*	25	*1130*	*1154*
	*559*	57	*100.00*	25	*1342*	*1366*
	*106*	*753*	*100.00*	25	*1462*	*1486*
	*207*	*287*	*100.00*	25	*1476*	*1500*
	*103*	*503*	*100.00*	25	*1581*	*1605*
	*361*	*577*	*100.00*	25	*1589*	*1613*
1369424_at	*781*	*113*	*100.00*	25	*1662*	*1686*
	*634*	*751*	*100.00*	25	*1762*	*1786*
	*443*	*211*	*100.00*	25	*1783*	*1807*
	*214*	*125*	*100.00*	25	*1857*	*1881*
	*605*	3	*100.00*	25	*1872*	*1896*
	*116*	*473*	*100.00*	25	*1921*	*1945*
	*585*	*463*	*100.00*	25	*2009*	*2033*
	*716*	*267*	*100.00*	25	*2069*	*2093*
	*478*	*519*	*100.00*	25	*2142*	*2166*
	*653*	*365*	*100.00*	25	*2182*	*2206*
	*448*	*721*	*100.00*	25	*2198*	*2222*
1390416_at	99	783	100.00	15	1691	1677
1391271_at	690	813	100.00	15	615	601
1385036_at	480	517	100.00	15	1864	1878
1373262_at	281	303	100.00	15	1073	1059
1369876_at	429	499	100.00	15	1248	1262
1397651_at	574	797	100.00	15	889	903
1398557_at	52	367	100.00	15	531	545
1381736_at	794	559	100.00	15	1671	1657
1370049_at	285	643	100.00	15	979	965
1375483_at	579	489	100.00	16	1974	1959
1381416_at	75	13	100.00	15	2045	2059
1378551_at	665	529	100.00	15	1625	1611
1382912_at	668	279	100.00	15	2063	2077
1384744_at	471	43	100.00	15	492	506
1392698_a_at	652	407	100.00	16	1856	1841
1378261_at	265	463	100.00	15	1686	1672
1396065_at	738	793	100.00	15	2251	2237
1394909_at	31	623	100.00	16	375	360
1397070_at	483	399	100.00	15	1590	1604
1397689_at	137	745	100.00	15	715	701
1387511_at	367	305	91.67	24	1300	1323
1379649_at	693	763	100.00	16	50	35
1379912_at	427	383	100.00	15	603	589
1393868_at	274	471	95.00	20	862	843
1385444_at	613	387	100.00	15	630	644
1388933_at	783	415	94.74	19	488	506
1369777_a_at	284	193	100.00	15	423	409
1373384_at	322	261	100.00	16	1675	1660
1383044_at	450	741	100.00	15	477	491

For Rat Expression 230A [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1369275_s_at	*144*	*169*	*100.00*	25	*1083*	*1107*
	*385*	*573*	*100.00*	25	*1089*	*1113*
	*238*	*235*	*100.00*	25	*1102*	*1126*
	*309*	*415*	*100.00*	25	*1107*	*1131*
	82	*359*	*100.00*	25	*1122*	*1146*
	*238*	85	*100.00*	25	*1130*	*1154*
	*481*	43	*100.00*	25	*1342*	*1366*
	40	*547*	*100.00*	25	*1462*	*1486*
	*595*	*209*	*100.00*	25	*1476*	*1500*
	*450*	*367*	*100.00*	25	*1581*	*1605*
	*478*	*417*	*100.00*	25	*1589*	*1613*
1369424_at	*467*	87	*100.00*	25	*1662*	*1686*
	*333*	*545*	*100.00*	25	*1762*	*1786*
	*307*	*193*	*100.00*	25	*1783*	*1807*
	*144*	97	*100.00*	25	*1857*	*1881*
	*124*	5	*100.00*	25	*1872*	*1896*
	38	*345*	*100.00*	25	*1921*	*1945*
	*126*	*337*	*100.00*	25	*2009*	*2033*
	*598*	*195*	*100.00*	25	*2069*	*2093*
	*315*	*377*	*100.00*	25	*2142*	*2166*
	*582*	*263*	*100.00*	25	*2182*	*2206*
	*115*	*517*	*100.00*	25	*2198*	*2222*
1390416_at	498	567	100.00	15	1691	1677
1373262_at	90	223	100.00	15	1073	1059
1369876_at	219	363	100.00	15	1248	1262
1370049_at	595	467	100.00	15	979	965
1375483_at	85	333	100.00	16	1974	1959
1387511_at	355	221	91.67	24	1300	1323
1385444_at	108	283	100.00	15	630	644
1388933_at	54	303	94.74	19	488	506
1373384_at	344	193	100.00	16	1675	1660
1369777_a_at	250	145	100.00	15	423	409

For Rat Expression 230B [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1391271_at	221	591	100.00	15	615	601
1385036_at	526	373	100.00	15	1864	1878
1397651_at	98	577	100.00	15	889	903
1398557_at	2	267	100.00	15	531	545
1381736_at	143	405	100.00	15	1671	1657
1381416_at	335	11	100.00	15	2045	2059
1378551_at	432	383	100.00	15	1625	1611
1382912_at	403	201	100.00	15	2063	2077
1384744_at	95	41	100.00	15	492	506
1392698_a_at	315	295	100.00	16	1856	1841
1378261_at	561	333	100.00	15	1686	1672
1396065_at	265	573	100.00	15	2251	2237
1394909_at	78	451	100.00	16	375	360
1397070_at	546	289	100.00	15	1590	1604
1397689_at	243	539	100.00	15	715	701
1379912_at	260	279	100.00	15	603	589
1379649_at	291	553	100.00	16	50	35
1393868_at	348	341	95.00	20	862	843
1383044_at	539	529	100.00	15	477	491

For HT Rat Focus [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1369275_s_at	*686*	*206*	*100.00*	25	*1083*	*1107*
	87	*720*	*100.00*	25	*1089*	*1113*
	*472*	*268*	*100.00*	25	*1102*	*1126*
	*684*	*514*	*100.00*	25	*1107*	*1131*
	*273*	*440*	*100.00*	25	*1122*	*1146*
	*346*	*102*	*100.00*	25	*1130*	*1154*
	*169*	52	*100.00*	25	*1342*	*1366*
	*648*	*674*	*100.00*	25	*1462*	*1486*
	*288*	*256*	*100.00*	25	*1476*	*1500*
	*544*	*452*	*100.00*	25	*1581*	*1605*
	*360*	*518*	*100.00*	25	*1589*	*1613*
1369424_at	58	*104*	*100.00*	25	*1662*	*1686*
	*266*	*674*	*100.00*	25	*1762*	*1786*
	*280*	*198*	*100.00*	25	*1783*	*1807*
	*373*	*116*	*100.00*	25	*1857*	*1881*
	*650*	2	*100.00*	25	*1872*	*1896*
	*719*	*424*	*100.00*	25	*1921*	*1945*
	*381*	*418*	*100.00*	25	*2009*	*2033*
	*650*	*238*	*100.00*	25	*2069*	*2093*
	*479*	*466*	*100.00*	25	*2142*	*2166*
	*679*	*326*	*100.00*	25	*2182*	*2206*
	*310*	*646*	*100.00*	25	*2198*	*2222*
1390416_at	48	702	100.00	15	1691	1677
1391271_at	85	730	100.00	15	615	601
1385036_at	63	466	100.00	15	1864	1878
1373262_at	534	270	100.00	15	1073	1059
1369876_at	346	450	100.00	15	1248	1262
1398557_at	581	326	100.00	15	531	545
1370049_at	60	578	100.00	15	979	965
1375483_at	137	442	100.00	16	1974	1959
1378551_at	512	474	100.00	15	1625	1611
1382912_at	511	250	100.00	15	2063	2077
1384744_at	166	50	100.00	15	492	506
1394909_at	335	558	100.00	16	375	360
1397689_at	457	666	100.00	15	715	701
1387511_at	301	272	91.67	24	1300	1323
1379649_at	730	682	100.00	16	50	35
1393868_at	31	426	95.00	20	862	843
1385444_at	252	346	100.00	15	630	644
1388933_at	518	376	94.74	19	488	506
1373384_at	192	234	100.00	16	1675	1660
1369777_a_at	555	174	100.00	15	423	409
1383044_at	650	664	100.00	15	477	491

For Rat Toxicology U34 [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1369275_s_at	*686*	*206*	*100.00*	25	*1083*	*1107*
	87	*720*	*100.00*	25	*1089*	*1113*
	*472*	*268*	*100.00*	25	*1102*	*1126*
	*684*	*514*	*100.00*	25	*1107*	*1131*
	*273*	*440*	*100.00*	25	*1122*	*1146*
	*346*	*102*	*100.00*	25	*1130*	*1154*
	*169*	52	*100.00*	25	*1342*	*1366*
	*648*	*674*	*100.00*	25	*1462*	*1486*
	*288*	*256*	*100.00*	25	*1476*	*1500*
	*544*	*452*	*100.00*	25	*1581*	*1605*
	*360*	*518*	*100.00*	25	*1589*	*1613*
1369424_at	58	*104*	*100.00*	25	*1662*	*1686*
	*266*	*674*	*100.00*	25	*1762*	*1786*
	*280*	*198*	*100.00*	25	*1783*	*1807*
	*373*	*116*	*100.00*	25	*1857*	*1881*
	*650*	2	*100.00*	25	*1872*	*1896*
	*719*	*424*	*100.00*	25	*1921*	*1945*
	*381*	*418*	*100.00*	25	*2009*	*2033*
	*650*	*238*	*100.00*	25	*2069*	*2093*
	*479*	*466*	*100.00*	25	*2142*	*2166*
	*679*	*326*	*100.00*	25	*2182*	*2206*
	*310*	*646*	*100.00*	25	*2198*	*2222*
1390416_at	48	702	100.00	15	1691	1677
1391271_at	85	730	100.00	15	615	601
1385036_at	63	466	100.00	15	1864	1878
1373262_at	534	270	100.00	15	1073	1059
1369876_at	346	450	100.00	15	1248	1262
1398557_at	581	326	100.00	15	531	545
1370049_at	60	578	100.00	15	979	965
1375483_at	137	442	100.00	16	1974	1959
1378551_at	512	474	100.00	15	1625	1611
1382912_at	511	250	100.00	15	2063	2077
1384744_at	166	50	100.00	15	492	506
1394909_at	335	558	100.00	16	375	360
1397689_at	457	666	100.00	15	715	701
1387511_at	301	272	91.67	24	1300	1323
1379649_at	730	682	100.00	16	50	35
1393868_at	31	426	95.00	20	862	843
1385444_at	252	346	100.00	15	630	644
1388933_at	518	376	94.74	19	488	506
1373384_at	192	234	100.00	16	1675	1660
1369777_a_at	555	174	100.00	15	423	409
1383044_at	650	664	100.00	15	477	491

For Rat Neurobiology U34 [RefSeq ID: NM_012693.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
J02669_s_at	*124*	*162*	*100.00*	25	*1059*	*1083*
	*125*	*162*	*100.00*	25	*1078*	*1102*
	*126*	*162*	*100.00*	25	*1081*	*1105*
	*127*	*162*	*100.00*	25	*1085*	*1109*
	*128*	*162*	*100.00*	25	*1088*	*1112*
	*129*	*162*	*100.00*	25	*1091*	*1115*
	*130*	*162*	*100.00*	25	*1094*	*1118*
	*131*	*162*	*100.00*	25	*1096*	*1120*
	*132*	*162*	*100.00*	25	*1098*	*1122*
	*133*	*162*	*100.00*	25	*1101*	*1125*
	*134*	*162*	*100.00*	25	*1103*	*1127*
	*135*	*162*	*100.00*	25	*1105*	*1129*
	*136*	*162*	*100.00*	25	*1108*	*1132*
	*137*	*162*	*100.00*	25	*1110*	*1134*
	*138*	*162*	*100.00*	25	*1112*	*1136*
	*139*	*162*	*100.00*	25	*1123*	*1147*
	*140*	*162*	*100.00*	25	*1125*	*1149*
	*141*	*162*	*100.00*	25	*1127*	*1151*
	*142*	*162*	*100.00*	25	*1133*	*1157*
	*143*	*162*	*100.00*	25	*1463*	*1487*
J04187_at	*190*	*116*	*100.00*	25	*1670*	*1694*
	*191*	*116*	*100.00*	25	*1676*	*1700*
	*192*	*116*	*100.00*	25	*1700*	*1724*
	*193*	*116*	*100.00*	25	*1706*	*1730*
	*194*	*116*	*100.00*	25	*1718*	*1742*
	*195*	*116*	*100.00*	25	*1754*	*1778*
	*196*	*116*	*100.00*	25	*1760*	*1784*
	*197*	*116*	*100.00*	25	*1766*	*1790*
	*198*	*116*	*100.00*	25	*1868*	*1892*
	*199*	*116*	*100.00*	25	*1874*	*1898*
	*200*	*116*	*100.00*	25	*1916*	*1940*
	*201*	*116*	*100.00*	25	*1994*	*2018*
	*202*	*116*	*100.00*	25	*2000*	*2024*
	*203*	*116*	*100.00*	25	*2006*	*2030*
	*204*	*116*	*100.00*	25	*2018*	*2042*
	*205*	*116*	*100.00*	25	*2144*	*2168*
	*206*	*116*	*100.00*	25	*2150*	*2174*
	*207*	*116*	*100.00*	25	*2186*	*2210*
	*208*	*116*	*100.00*	25	*2198*	*2222*
	*209*	*116*	*100.00*	25	*2204*	*2228*
D17349cds_f_at	103	86	100.00	15	1244	1258
M13234cds_f_at	195	104	100.00	15	1244	1258