BlastResult

Gene

Protein

Transcript

Blast result

Transcript specific probe-cluster

For Rat Genome U34 A [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
M23889_g_at	280	135	100.00	15	1115	1129
	281	135	100.00	15	1115	1129
	282	135	100.00	15	1115	1129
Y13336cds_g_at	127	59	100.00	16	1503	1518
Y13336cds_g_at	128	59	100.00	16	1503	1518
rc_AA799679_at	526	513	100.00	15	773	759
rc_AA799679_at	527	513	100.00	15	773	759
rc_AI639434_at	319	295	100.00	15	365	351
rc_AI639434_at	320	295	100.00	15	365	351
M83746_at	282	207	100.00	15	757	771
M83746_at	282	207	100.00	15	937	951
M81397_at	79	361	100.00	16	423	438
M81397_at	80	361	100.00	16	423	438
M18331_at	206	133	100.00	15	608	622
D12770_s_at	431	105	100.00	15	1201	1215
U21954_at	447	225	100.00	16	1313	1328
rc_AI137421_at	104	329	100.00	15	440	426
AF064541_s_at	221	257	100.00	15	331	345
AJ010386_s_at	121	101	100.00	15	237	251
X06423_at	422	385	100.00	15	37	23

For Rat Genome U34 B [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
rc_AA957491_at	327	203	100.00	15	135	121
	328	203	100.00	15	135	121
	329	203	100.00	15	135	121
	330	203	100.00	15	135	121
rc_AA900949_at	80	71	100.00	15	601	615
rc_AA900949_at	81	71	100.00	15	601	615
rc_AA851183_at	122	37	100.00	15	1622	1636
rc_AI008474_at	370	297	100.00	15	675	661
rc_AA849032_at	64	13	100.00	15	81	67
rc_AI012078_at	396	343	100.00	15	1226	1240
rc_AI009233_at	186	307	100.00	15	546	532
rc_AI007995_at	103	293	100.00	15	236	250

For Rat Genome U34 C [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
rc_AI172263_at	144	243	100.00	15	1079	1065
rc_AI172263_at	145	243	100.00	15	1079	1065
rc_AI168975_at	401	137	100.00	16	1158	1143
rc_AA818806_at	101	237	100.00	16	944	929
rc_AI228314_at	314	355	100.00	15	80	94
rc_AI227632_at	329	341	100.00	15	1588	1602
rc_AI230912_at	448	393	100.00	15	458	472
H32451_at	234	517	100.00	15	532	546

For Rat Genome 230 2.0 [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1378633_at	*683*	*365*	*100.00*	25	*1208*	*1232*
	*323*	19	*100.00*	25	*1248*	*1272*
	*575*	*769*	*100.00*	25	*1286*	*1310*
	50	*399*	*100.00*	25	*1398*	*1422*
	*497*	9	*100.00*	25	*1441*	*1465*
	*721*	*549*	*100.00*	25	*1485*	*1509*
	*582*	*811*	*100.00*	25	*1511*	*1535*
	39	*793*	*100.00*	25	*1525*	*1549*
	78	*231*	*100.00*	25	*1567*	*1591*
	*548*	67	*100.00*	25	*1598*	*1622*
	*169*	*193*	*100.00*	25	*1612*	*1636*
1391002_at	203	829	100.00	15	840	826
1377340_at	2	757	100.00	17	605	589
1386272_at	748	515	95.00	20	1287	1268
1374726_at	313	513	94.74	19	594	612
1378435_at	812	735	100.00	15	511	525
1385799_at	189	657	100.00	15	1020	1034
1381980_at	811	293	100.00	15	850	864
1371196_at	81	411	100.00	15	1115	1129
1392850_at	416	425	100.00	15	601	615
1390316_at	591	597	100.00	15	729	715
1396400_at	424	245	100.00	15	1483	1497
1379160_at	306	305	100.00	15	418	404
1369096_at	596	807	100.00	16	1313	1328
1394813_at	270	97	100.00	16	188	173
1367597_at	60	111	100.00	15	37	23
1391604_at	376	569	100.00	15	171	185
1368773_at	737	29	100.00	15	407	393
1379352_at	716	367	100.00	18	41	24
1371508_at	828	827	100.00	15	1226	1240
1376379_a_at	177	393	94.74	19	147	129
1379376_at	631	737	100.00	15	312	298
1395873_at	569	241	100.00	15	284	270
1393865_at	596	751	100.00	17	1173	1189
1397844_at	326	245	100.00	15	875	889
1371195_at	66	303	100.00	15	1129	1115
1398510_at	289	99	100.00	15	1135	1149
1373895_at	725	155	100.00	15	879	893
1374841_at	630	443	100.00	15	94	80
1382324_at	183	313	100.00	15	1622	1636
1387353_at	120	279	100.00	15	823	809
1377395_at	537	439	100.00	15	1417	1431
1369240_a_at	474	813	100.00	15	331	345
1397209_at	37	721	94.74	19	32	50
1370671_at	121	681	100.00	15	841	827
1373403_at	762	187	100.00	16	77	92
1396034_at	156	351	100.00	15	408	394

For Rat Expression 230A [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1377340_at	577	547	100.00	17	605	589
1374726_at	348	373	94.74	19	594	612
1381980_at	290	217	100.00	15	850	864
1371196_at	292	299	100.00	15	1115	1129
1390316_at	202	435	100.00	15	729	715
1369096_at	236	585	100.00	16	1313	1328
1367597_at	333	83	100.00	15	37	23
1368773_at	364	23	100.00	15	407	393
1376379_a_at	576	285	94.74	19	147	129
1371508_at	563	599	100.00	15	1226	1240
1371195_at	277	221	100.00	15	1129	1115
1374841_at	48	327	100.00	15	94	80
1373895_at	475	115	100.00	15	879	893
1387353_at	554	209	100.00	15	823	809
1377395_at	575	317	100.00	15	1417	1431
1369240_a_at	570	589	100.00	15	331	345
1370671_at	268	495	100.00	15	841	827
1373403_at	99	141	100.00	16	77	92

For Rat Expression 230B [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1378633_at	*142*	*267*	*100.00*	25	*1208*	*1232*
	*298*	17	*100.00*	25	*1248*	*1272*
	*240*	*555*	*100.00*	25	*1286*	*1310*
	*453*	*289*	*100.00*	25	*1398*	*1422*
	*238*	9	*100.00*	25	*1441*	*1465*
	61	*399*	*100.00*	25	*1485*	*1509*
	*200*	*587*	*100.00*	25	*1511*	*1535*
	*565*	*573*	*100.00*	25	*1525*	*1549*
	51	*165*	*100.00*	25	*1567*	*1591*
	*231*	51	*100.00*	25	*1598*	*1622*
	53	*139*	*100.00*	25	*1612*	*1636*
1391002_at	103	597	100.00	15	840	826
1386272_at	327	373	95.00	20	1287	1268
1378435_at	36	521	100.00	15	511	525
1385799_at	375	481	100.00	15	1020	1034
1392850_at	505	309	100.00	15	601	615
1396400_at	550	175	100.00	15	1483	1497
1379160_at	208	221	100.00	15	418	404
1394813_at	304	71	100.00	16	188	173
1391604_at	518	411	100.00	15	171	185
1379352_at	182	267	100.00	18	41	24
1379376_at	497	509	100.00	15	312	298
1395873_at	158	173	100.00	15	284	270
1393865_at	406	549	100.00	17	1173	1189
1397844_at	22	175	100.00	15	875	889
1398510_at	591	73	100.00	15	1135	1149
1382324_at	24	227	100.00	15	1622	1636
1397209_at	40	521	94.74	19	32	50
1396034_at	75	255	100.00	15	408	394

For HT Rat Focus [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1378633_at	*356*	*690*	*100.00*	25	*1286*	*1310*
	*609*	*356*	*100.00*	25	*1398*	*1422*
	*434*	8	*100.00*	25	*1441*	*1465*
	98	*494*	*100.00*	25	*1485*	*1509*
	*403*	*726*	*100.00*	25	*1511*	*1535*
	*702*	*710*	*100.00*	25	*1525*	*1549*
	*384*	*208*	*100.00*	25	*1567*	*1591*
	*113*	58	*100.00*	25	*1598*	*1622*
	*322*	*174*	*100.00*	25	*1612*	*1636*
	*191*	*328*	*100.00*	25	*1208*	*1232*
	*175*	16	*100.00*	25	*1248*	*1272*
1391002_at	500	742	100.00	15	840	826
1377340_at	723	676	100.00	17	605	589
1374726_at	78	462	94.74	19	594	612
1378435_at	277	662	100.00	15	511	525
1381980_at	409	266	100.00	15	850	864
1371196_at	217	370	100.00	15	1115	1129
1390316_at	244	536	100.00	15	729	715
1396400_at	33	222	100.00	15	1483	1497
1369096_at	622	722	100.00	16	1313	1328
1394813_at	77	88	100.00	16	188	173
1367597_at	212	100	100.00	15	37	23
1391604_at	619	510	100.00	15	171	185
1368773_at	150	28	100.00	15	407	393
1379352_at	404	326	100.00	18	41	24
1376379_a_at	145	350	94.74	19	147	129
1393865_at	675	670	100.00	17	1173	1189
1397844_at	570	220	100.00	15	875	889
1371195_at	307	270	100.00	15	1129	1115
1398510_at	411	90	100.00	15	1135	1149
1374841_at	438	404	100.00	15	94	80
1373895_at	664	140	100.00	15	879	893
1387353_at	124	248	100.00	15	823	809
1377395_at	213	398	100.00	15	1417	1431
1369240_a_at	640	726	100.00	15	331	345
1397209_at	137	648	94.74	19	32	50
1370671_at	440	610	100.00	15	841	827
1396034_at	156	314	100.00	15	408	394

For Rat Toxicology U34 [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
1378633_at	*356*	*690*	*100.00*	25	*1286*	*1310*
	*609*	*356*	*100.00*	25	*1398*	*1422*
	*434*	8	*100.00*	25	*1441*	*1465*
	98	*494*	*100.00*	25	*1485*	*1509*
	*403*	*726*	*100.00*	25	*1511*	*1535*
	*702*	*710*	*100.00*	25	*1525*	*1549*
	*384*	*208*	*100.00*	25	*1567*	*1591*
	*113*	58	*100.00*	25	*1598*	*1622*
	*322*	*174*	*100.00*	25	*1612*	*1636*
	*191*	*328*	*100.00*	25	*1208*	*1232*
	*175*	16	*100.00*	25	*1248*	*1272*
1391002_at	500	742	100.00	15	840	826
1377340_at	723	676	100.00	17	605	589
1374726_at	78	462	94.74	19	594	612
1378435_at	277	662	100.00	15	511	525
1381980_at	409	266	100.00	15	850	864
1371196_at	217	370	100.00	15	1115	1129
1390316_at	244	536	100.00	15	729	715
1396400_at	33	222	100.00	15	1483	1497
1369096_at	622	722	100.00	16	1313	1328
1394813_at	77	88	100.00	16	188	173
1367597_at	212	100	100.00	15	37	23
1391604_at	619	510	100.00	15	171	185
1368773_at	150	28	100.00	15	407	393
1379352_at	404	326	100.00	18	41	24
1376379_a_at	145	350	94.74	19	147	129
1393865_at	675	670	100.00	17	1173	1189
1397844_at	570	220	100.00	15	875	889
1371195_at	307	270	100.00	15	1129	1115
1398510_at	411	90	100.00	15	1135	1149
1374841_at	438	404	100.00	15	94	80
1373895_at	664	140	100.00	15	879	893
1387353_at	124	248	100.00	15	823	809
1377395_at	213	398	100.00	15	1417	1431
1369240_a_at	640	726	100.00	15	331	345
1397209_at	137	648	94.74	19	32	50
1370671_at	440	610	100.00	15	841	827
1396034_at	156	314	100.00	15	408	394

For Rat Neurobiology U34 [RefSeq ID: NM_001009649.1]

Probe-set	Co-ordinates		Percentage identity	Aligned bases	Start position	End position
Probe-set	X	Y	Percentage identity	Aligned bases	Start position	End position
Y13336cds_g_at	135	202	100.00	16	1503	1518
Y13336cds_g_at	136	202	100.00	16	1503	1518