TransSpProbes

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Protein

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Blast result

Transcript specific probe-cluster

For Human genome U133 plus 2 array
[RefSeq ID: NM_003162.3 (Number of probes = 87)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
236980_at	140	657
	331	441
	731	609
	839	675
	1116	1101
	1022	759
	197	173
	886	211
	604	1083
227422_at	1123	235
	91	1061
	1082	627
	796	685
	904	895
	1136	143
	499	143
	1112	809
	1084	61
	728	1001
	353	331
242989_at	364	751
	898	319
	53	913
	840	161
	447	81
	1023	917
	1014	633
	678	191
	80	41
	621	257
205520_at	842	851
	860	413
	903	367
	725	999
	122	555
	983	295
	93	725
	383	877
	1049	785
	490	829
	387	349
230734_x_at	183	1001
	79	1109
	1152	1057
	1040	523
	1055	939
	380	153
	940	1089
	294	211
	552	1131
	615	671
	820	965
215287_at	76	397
	956	99
	939	745
	1139	633
	16	515
	870	1153
	752	785
	974	751
	987	585
	1114	651
	872	481
1569815_x_at	974	113
1569815_x_at	1051	1141
236388_at	500	949
	120	411
	612	391
	1005	1141
	1148	211
	590	1063
	897	837
	311	119
	902	371
	764	235
	419	763
244354_at	1032	1001
	149	541
	471	713
	499	105
	542	1079
	336	869
	233	35
	316	715
	599	763
	963	231
	522	685

For Human genome U133 A 2 array
[RefSeq ID: NM_003162.3 (Number of probes = 22)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
205520_at	635	469
	1	335
	166	163
	235	433
	651	237
	242	209
	415	523
	510	197
	505	597
	507	493
	225	509
215287_at	43	287
	357	213
	383	445
	38	353
	239	449
	277	469
	681	685
	263	381
	691	391
	120	309
	283	57

For Human genome U133 A array
[RefSeq ID: NM_003162.3 (Number of probes = 22)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
205520_at	591	617
	600	523
	487	203
	143	345
	493	167
	156	539
	30	511
	547	445
	251	215
	187	485
	69	247
215287_at	204	709
	271	393
	535	363
	497	457
	174	483
	392	463
	287	319
	242	405
	537	291
	14	59
	457	231

For Human genome U133 B array
[RefSeq ID: NM_003162.3 (Number of probes = 63)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
236980_at	317	399
	527	369
	536	663
	279	101
	377	675
	350	265
	159	465
	301	125
	358	409
227422_at	423	85
	171	381
	250	497
	289	67
	212	139
	501	417
	311	39
	175	649
	134	613
	659	193
	298	549
242989_at	707	459
	302	27
	60	561
	671	149
	402	563
	517	189
	429	95
	588	111
	575	385
	109	51
230734_x_at	196	691
	422	123
	192	409
	426	89
	560	679
	313	317
	216	667
	582	647
	261	591
	12	577
	611	611
236388_at	213	71
	340	221
	627	123
	407	233
	210	245
	108	469
	631	651
	548	581
	259	699
	378	515
	101	139
244354_at	317	661
	428	63
	322	467
	496	133
	273	417
	255	535
	254	437
	48	25
	83	437
	595	325
	56	615

For Human genome U95 Av2 array
[RefSeq ID: NM_003162.3 (Number of probes = 29)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
33298_at	9	199
	514	615
	275	179
	7	205
	404	59
	35	23
	23	265
	102	93
	571	583
	124	85
	122	65
	15	25
	243	195
	26	251
	245	15
	250	25
31736_at	410	265
	333	25
	274	359
	296	37
	326	3
	150	167
	34	53
	391	557
	499	55
	104	29
	361	155
	2	35
	86	23

For Human genome U95 B array
[RefSeq ID: NM_003162.3 (Number of probes = 16)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
53132_at	415	625
	328	561
	352	67
	77	283
	481	91
	338	53
	62	389
	45	105
	111	105
	467	25
	134	357
	341	155
	413	407
	110	553
	589	483
	466	25

For Human genome U95 C array
[RefSeq ID: NM_003162.3 (Number of probes = 58)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
62989_f_at	51	479
	52	479
	306	271
	1	469
	138	463
	453	53
	208	323
	349	229
	254	327
	559	99
	454	53
	283	217
	356	237
	278	247
62990_r_at	342	167
	116	33
	627	521
	72	105
	543	189
	328	31
	310	35
	459	265
	115	33
	238	357
	188	71
	317	133
	299	189
	316	133
	515	495
60565_at	273	37
	47	85
	61	191
	276	5
	30	161
	190	99
	31	287
	172	157
	120	95
	121	95
	474	29
	73	265
	110	133
	110	229
	164	449
	122	67
62991_f_at	38	71
	277	3
	71	229
	82	107
	52	19
	115	69
	185	73
	71	65
	94	101
	1	63
	99	445
	32	71
	81	93

For Human genome U95 D array
[RefSeq ID: NM_003162.3 (Number of probes = 48)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
82977_at	528	443
	472	387
	471	387
	589	335
	498	531
	621	479
	554	259
	252	583
	277	535
	508	563
	558	495
	354	609
	491	379
	419	597
	440	565
	534	247
70775_at	405	153
	22	243
	20	59
	42	229
	153	377
	229	115
	206	15
	223	289
	20	167
	118	103
	248	151
	292	237
	24	289
	56	363
	384	21
	74	49
78779_at	394	159
	511	283
	197	481
	206	493
	240	457
	9	511
	469	513
	272	273
	412	139
	289	301
	62	497
	561	93
	483	49
	284	345
	583	137
	593	579

For Human genome U95 E array
[RefSeq ID: NM_003162.3 (Number of probes = 16)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
81992_at	418	257
	84	89
	193	355
	251	627
	82	389
	129	109
	167	183
	128	119
	93	27
	398	133
	1	111
	508	61
	249	59
	317	41
	407	15
	477	615

For Human genome focus array
[RefSeq ID: NM_003162.3 (Number of probes = 11)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
205520_at	389	331
	196	219
	62	305
	229	131
	304	137
	334	341
	302	107
	209	155
	231	391
	364	323
	35	285

For HT Human genome U133 plus PM array
[RefSeq ID: NM_003162.3 (Number of probes = 13)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
1569815_PM_x_at	479	740
1569815_PM_x_at	87	739
205520_PM_at	13	556
	408	117
	657	597
	500	509
	698	153
	191	645
	44	439
	369	267
	573	258
	540	613
	61	500

For HT human genome U133A array
[RefSeq ID: NM_003162.3 (Number of probes = 22)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
205520_at	683	543
	266	225
	632	367
	340	647
	105	479
	392	565
	686	515
	723	235
	240	551
	574	193
	375	265
215287_at	157	241
	680	709
	430	315
	187	423
	513	493
	89	347
	567	393
	107	513
	330	79
	610	435
	689	489

For HT human genome U133B array
[RefSeq ID: NM_003162.3 (Number of probes = 63)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
236980_at	621	124
	438	98
	389	668
	339	680
	219	404
	238	374
	742	396
	113	470
	492	266
227422_at	648	386
	268	86
	584	38
	53	422
	711	138
	407	618
	662	552
	419	54
	630	502
	663	652
	359	82
242989_at	727	48
	71	192
	578	26
	614	566
	734	462
	381	564
	192	392
	522	150
	24	96
	168	104
230734_x_at	296	318
	82	124
	266	412
	71	654
	529	700
	286	582
	188	618
	319	672
	215	684
	233	598
	166	90
236388_at	583	244
	654	706
	218	588
	336	470
	675	234
	154	224
	290	520
	293	124
	527	656
	642	70
	177	138
244354_at	354	422
	573	440
	389	470
	617	618
	698	664
	278	328
	123	24
	489	136
	576	64
	678	538
	292	440

For U133 X3P array
[RefSeq ID: NM_003162.3 (Number of probes = 88)]

Probe-cluster	Co-ordinates
Probe-cluster	X	Y
probe:U133_X3P:Hs.128434.0.S1_3p_at	1068	1155
	931	527
	460	17
	234	425
	1135	1151
	312	563
	397	593
	1107	677
	627	385
	735	497
	824	777
probe:U133_X3P:Hs.90787.0.A1_3p_at	275	175
	651	1089
	252	385
	432	1149
	826	1125
	783	1095
	229	1077
	522	1101
	581	273
	508	385
	624	475
probe:U133_X3P:Hs.127486.0.A1_3p_at	971	1129
	414	129
	336	433
	405	1091
	288	281
	986	613
	719	129
	111	53
	1067	1029
	1031	1069
probe:U133_X3P:Hs.211253.0.A1_3p_at	769	247
	416	717
	1155	755
	232	203
	279	467
	567	121
	1146	851
	1082	851
	1052	327
	989	707
	575	219
probe:U133_X3P:Hs.5635.0.A1_3p_at	556	1045
	193	51
	585	267
	844	573
	1096	655
	36	1097
	279	1019
	896	875
	535	511
	482	361
	567	329
probe:U133_X3P:Hs.135162.0.A1_3p_at	1021	149
	50	131
	471	37
	156	673
	370	1139
	1100	1029
	304	639
	353	279
	435	63
	500	1053
	259	369
probe:U133_X3P:Hs2.385514.1.S1_3p_x_at	280	131
probe:U133_X3P:Hs2.385514.1.S1_3p_x_at	354	1137
probe:U133_X3P:g4507282_3p_at	1076	51
	388	539
	83	1059
	362	895
	1041	705
	742	197
	895	697
	787	21
	470	713
	998	117
	320	337
probe:U133_X3P:Hs.46667.0.A1_3p_at	94	1045
	455	1003
	1070	305
	1053	205
	174	771
	855	1159
	762	257
	906	235
	548	307
	269	291