Search results for the GEO ID: GSE10021  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM253203 | GPL570 |
|
A549_1
|
A549 cell line, no treatment
|
human cultured cell line derived from lung carcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253203
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253203/suppl/GSM253203.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253203/suppl/GSM253203.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253204 | GPL570 |
|
HT1080_1
|
HT1080 cell line
|
human cultured cell line derived from fibrosarcoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253204
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253204/suppl/GSM253204.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253204/suppl/GSM253204.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253205 | GPL570 |
|
HeLaS3_1
|
HeLaS3 cell line
|
human cultured cell line derived from cervix carcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253205
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253205/suppl/GSM253205.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253205/suppl/GSM253205.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253206 | GPL570 |
|
Huh7_1
|
Huh7 cell line
|
human cultured cell line derived from hapatocellular carcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253206
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253206/suppl/GSM253206.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253206/suppl/GSM253206.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253207 | GPL570 |
|
MCF7_1
|
MCF7 cell line, no treatment
|
human cultured cell line derived from breast adenocarcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253207
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253207/suppl/GSM253207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253207/suppl/GSM253207.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253208 | GPL570 |
|
MDAMB231_1
|
MDA-MB-231 cell line, no treatment
|
human cultured cell line derived from breast adenocarcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253208
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253208/suppl/GSM253208.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253208/suppl/GSM253208.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253209 | GPL570 |
|
Jurkat_1
|
Jurkat cell line, no treatment
|
human cultured cell line derived from T cell lukemia
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253209
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253209/suppl/GSM253209.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253209/suppl/GSM253209.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253210 | GPL570 |
|
HEK293T_1
|
HEK293T cell line, no treatment
|
human cultured cell line derived from embryonal kidney
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253210
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253210/suppl/GSM253210.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253210/suppl/GSM253210.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253211 | GPL570 |
|
HT29_1
|
HT29 cell line, no treatment
|
human cultured cell line derived from colon adenocarcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253211
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253211/suppl/GSM253211.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253211/suppl/GSM253211.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253212 | GPL570 |
|
HepG2_1
|
HepG2 cell line, no treatment
|
human cultured cell line derived from hepatocellular carcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253212
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253212/suppl/GSM253212.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253212/suppl/GSM253212.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253213 | GPL570 |
|
SKNMC_1
|
SKNMC cell line, no treatment
|
human cultured cell line derived from neuroblastoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253213
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253213/suppl/GSM253213.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253213/suppl/GSM253213.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253214 | GPL570 |
|
CACO2_1
|
Caco2 cell line, no treatment
|
human cultured cell line derived from colon adenocarcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253214
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253214/suppl/GSM253214.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253214/suppl/GSM253214.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253215 | GPL570 |
|
HeLa_1
|
HeLa cell line, no treatment
|
human cultured cell line derived from cervix carcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253215
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253215/suppl/GSM253215.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253215/suppl/GSM253215.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253216 | GPL570 |
|
HEK293_1
|
HEK293 cell line, no treatment
|
human cultured cell line derived from embryonal kidney
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253216
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253216/suppl/GSM253216.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253216/suppl/GSM253216.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253217 | GPL570 |
|
HCT116_1
|
HCT116 cell line, no treatment
|
human cultured cell line derived from colon carcinoma
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253217
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in DMEM medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253217/suppl/GSM253217.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253217/suppl/GSM253217.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
GSM253218 | GPL570 |
|
K562_1
|
K562 cell line, no treatment
|
human cultured cell line derived from chronic myeloid leukemia
|
Genome-wide mRNA expression profiles of sixteen human cell lines were obtained by microarray analysis with the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array as manufacture’s instructions.
|
| Sample_geo_accession | GSM253218
| | Sample_status | Public on Apr 01 2008
| | Sample_submission_date | Dec 25 2007
| | Sample_last_update_date | Dec 28 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI medium containing 10% FBS and exponentially growing cells were harvested.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Exponentially growing cells were harvested and total RNA was collected by standard procedures using ISOGEN (Nippon Gene) and chloroform and precipitated with isopropanol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesized from total RNA. An in vitro transcription reaction was then carried out to produce biotin-labeled complementary RNA (cRNA) from the cDNA. The cRNA was then fragmented and used for hybridization.
| | Sample_hyb_protocol | As manufacture’s instructions (Affymetrix).
| | Sample_scan_protocol | Scanned by a Genechip Scanner 3000
| | Sample_data_processing | We used the robust multi-array analysis (RMA) expression measure that represents the log transform of (background corrected and normalized) intensities of the GeneChips. The RMA measures were computed using the R package program (http://www.bioconductor.org).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yoshinao,,Ruike
| | Sample_contact_email | yruike@f01.mbox.media.kyoto-u.ac.jp
| | Sample_contact_laboratory | Genomic Drug Discovery Science
| | Sample_contact_department | Pharmaceutical Sciences
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | 46-29 Yoshida-Shimo-Adachi-cho
| | Sample_contact_city | Sakyo-ku
| | Sample_contact_state | Kyoto
| | Sample_contact_zip/postal_code | 606-8501
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253218/suppl/GSM253218.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM253nnn/GSM253218/suppl/GSM253218.CHP.gz
| | Sample_series_id | GSE10021
| | Sample_data_row_count | 54675
| | |
|
| |
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