Search results for the GEO ID: GSE10166 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM256739 | GPL339 |
|
CD4-CD8-_DN_thymus emigrants_corn_oil_1
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CD4-CD8-_DN_thymus emigrants
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Strain: C57BL/6
Tissue: Thymus emigrants
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: 10 nM 2,3,7,8-Tetrachlorodibenzo-p-dioxin
Replicate: 1
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256739
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 11 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256739/suppl/GSM256739.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
|
GSM256741 | GPL339 |
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CD4-CD8-_DN_thymus emigrants_corn_oil_2
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CD4-CD8-_DN_thymus emigrants
|
Strain: C57BL/6
Tissue: Thymus
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: Dioxane 2
Replicate: 2
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256741
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 11 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256741/suppl/GSM256741.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
|
GSM256743 | GPL339 |
|
CD4-CD8-_DN_thymus emigrants_TCDD_1
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CD4-CD8-_DN_thymus emigrants
|
Strain: C57BL/6
Tissue: Thymus
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: 10 nM 2,3,7,8-Tetrachlorodibenzo-p-dioxin
Replicate: 1
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256743
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 11 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256743/suppl/GSM256743.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
|
GSM256744 | GPL339 |
|
CD4-CD8-_DN_thymus emigrants_TCDD_2
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CD4-CD8-_DN_thymus emigrants
|
Strain: C57BL/6
Tissue: Thymus Emigrants
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: 10 nM 2,3,7,8-Tetrachlorodibenzo-p-dioxin
Replicate: 2
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256744
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 11 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256744/suppl/GSM256744.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
|
GSM256979 | GPL339 |
|
CD4-CD8-_DN_Thymocytes_Oil_1
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CD4-CD8-_DN_Thymocytes
|
sample_characteristics_ch1: Strain: C57BL/6
Tissue: Thymus
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: Corn Oil
Replicate: 1
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256979
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 14 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256979/suppl/GSM256979.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
|
GSM256980 | GPL339 |
|
CD4-CD8-_DN_Thymocytes_Oil_2
|
CD4-CD8-_DN_Thymocytes
|
sample_characteristics_ch1: Strain: C57BL/6
Tissue: Thymus
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: Corn oil
Replicate: 2
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256980
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 14 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256980/suppl/GSM256980.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
|
GSM256981 | GPL339 |
|
CD4-CD8-_DN_Thymocytes_TCDD_1
|
CD4-CD8-_DN_Thymocytes
|
Strain: C57BL/6
Tissue: Thymus
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: 10 nM 2,3,7,8-Tetrachlorodibenzo-p-dioxin
Replicate: 1
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256981
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 14 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256981/suppl/GSM256981.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
|
GSM256982 | GPL339 |
|
CD4-CD8-_DN_Thymocytes_TCDD_2
|
CD4-CD8-_DN_Thymocytes
|
Strain: C57BL/6
Tissue: Thymus
Cell Type: CD4-CD8- Thymocytes
Age: 6-8 weeks
Treatment: 10 nM 2,3,7,8-Tetrachlorodibenzo-p-dioxin
Replicate: 2
|
Female, 6-8 week old C57BL/6 mice were i.p. injected with corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
|
Sample_geo_accession | GSM256982
| Sample_status | Public on Nov 25 2008
| Sample_submission_date | Jan 14 2008
| Sample_last_update_date | Nov 24 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Female, 6-8 week old C57BL/6 mice were i.p. injected with 10µg/kg TCDD in corn oil or corn oil alone. 5 days after the injection thymocytes were labled by in vivo FITC injection. 24h after injection thymi and spleen were surgically removed and CD4-CD8- cells from thymus (thymocytes) or spleen (thymus emigrants) directly FACS sorted into TRIzol.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using linear poly acrylamide as precipitation aid. Extracted RNA was amplified using Ambions message Amp kit and checked for purity and integrity. The following steps were done according to Affymetrix standard protocols.
| Sample_label_ch1 | PE
| Sample_label_protocol_ch1 | Affymetrix standard protocols
| Sample_hyb_protocol | Affymetrix standard protocols
| Sample_scan_protocol | Affymetrix standard protocols
| Sample_data_processing | Cel files were processed using RMA (affy-package, R2.0)
| Sample_platform_id | GPL339
| Sample_contact_name | Markus,,Frericks
| Sample_contact_email | fremar5@web.de
| Sample_contact_phone | +49(0)211 3389253
| Sample_contact_fax | +49(0)211 3190910
| Sample_contact_department | Immunology
| Sample_contact_institute | Institute for Environmental Research
| Sample_contact_address | Auf'm Hennekamp 50
| Sample_contact_city | Duesseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM256nnn/GSM256982/suppl/GSM256982.CEL.gz
| Sample_series_id | GSE10166
| Sample_data_row_count | 22690
| |
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