Search results for the GEO ID: GSE10232 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM257471 | GPL570 |
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Jurkat cyclin T1 knockdown PMA treated 1
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Jurkat cell line
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Lymphocyte cell line.
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All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8152.
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Sample_geo_accession | GSM257471
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 16 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with shRNA virus against cyclin T1 and then treated with 10 ng/ml phorbol 12-myristate 13-acetate and 1nM ionomycin..
| Sample_growth_protocol_ch1 | Jurkat cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257471/suppl/GSM257471.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257471/suppl/GSM257471.CHP.gz
| Sample_series_id | GSE10232
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
| |
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GSM257472 | GPL570 |
|
Jurkat control shRNA PMA treated 1
|
Jurkat cell line
|
Lymphocyte cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8154.
|
Sample_geo_accession | GSM257472
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 16 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with control shRNA virus and then treated with 1ng/ml phorbol 12-myristate 13-acetate and 1nM ionomycin.
| Sample_growth_protocol_ch1 | Jurkat cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257472/suppl/GSM257472.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257472/suppl/GSM257472.CHP.gz
| Sample_series_id | GSE10232
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
| |
|
GSM257660 | GPL570 |
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Jurkat cyclin T1 knockdown PMA treated 2
|
Jurkat cell line
|
Lymphocyte cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8503.
|
Sample_geo_accession | GSM257660
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 17 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with shRNA virus against cyclin T1 and then treated with 10 ng/ml phorbol 12-myristate 13-acetate and 1nM ionomycin..
| Sample_growth_protocol_ch1 | Jurkat cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257660/suppl/GSM257660.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257660/suppl/GSM257660.CHP.gz
| Sample_series_id | GSE10232
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
| |
|
GSM257661 | GPL570 |
|
Jurkat control shRNA PMA treated 2
|
Jurkat cell line
|
Lymphocyte cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8505.
|
Sample_geo_accession | GSM257661
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 17 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with control shRNA virus and then treated with 1ng/ml phorbol 12-myristate 13-acetate and 1nM ionomycin.
| Sample_growth_protocol_ch1 | Jurkat cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257661/suppl/GSM257661.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257661/suppl/GSM257661.CHP.gz
| Sample_series_id | GSE10232
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
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