Search results for the GEO ID: GSE10233  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM257589 | GPL570 |
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MM6 cyclin T1 knockdown PMA treated 1
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MM6 cell line
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Monocytic cell line.
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All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 6487.
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| Sample_geo_accession | GSM257589
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jan 17 2008
| | Sample_last_update_date | May 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MM6 cells were transduced with shRNA against cyclin T1 and then treated with 10ng/ml PMA.
| | Sample_growth_protocol_ch1 | MM6 cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone), ), non-essential amino acids (Invitrogen), l-glutamine (Invitrogen), and OPI media supplement (Sigma) containing 0.15 mg of oxalacetate, 0.5 g of pyruvate and 8.2 mg of bovine insulin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | See affymetrix protocol.
| | Sample_hyb_protocol | See affymetrix protocol.
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew ,P.,Rice
| | Sample_contact_laboratory | Rice
| | Sample_contact_department | Molecular Virology and Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77025
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257589/suppl/GSM257589.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257589/suppl/GSM257589.CHP.gz
| | Sample_series_id | GSE10233
| | Sample_series_id | GSE11462
| | Sample_data_row_count | 54675
| | |
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GSM257591 | GPL570 |
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MM6 cyclin T1 knockdown PMA treated 2
|
MM6 cell line
|
Monocytic cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 6889.
|
| Sample_geo_accession | GSM257591
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jan 17 2008
| | Sample_last_update_date | May 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MM6 cells were transduced with shRNA against cyclin T1 and then treated with 10ng/ml PMA.
| | Sample_growth_protocol_ch1 | MM6 cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone), ), non-essential amino acids (Invitrogen), l-glutamine (Invitrogen), and OPI media supplement (Sigma) containing 0.15 mg of oxalacetate, 0.5 g of pyruvate and 8.2 mg of bovine insulin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | See affymetrix protocol.
| | Sample_hyb_protocol | See affymetrix protocol.
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew ,P.,Rice
| | Sample_contact_laboratory | Rice
| | Sample_contact_department | Molecular Virology and Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77025
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257591/suppl/GSM257591.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257591/suppl/GSM257591.CHP.gz
| | Sample_series_id | GSE10233
| | Sample_series_id | GSE11462
| | Sample_data_row_count | 54675
| | |
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GSM257593 | GPL570 |
|
MM6 cyclin T1 knockdown PMA treated 3
|
MM6 cell line
|
Monocytic cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 7986.
|
| Sample_geo_accession | GSM257593
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jan 17 2008
| | Sample_last_update_date | May 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MM6 cells were transduced with shRNA against cyclin T1 and then treated with 10ng/ml PMA.
| | Sample_growth_protocol_ch1 | MM6 cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone), ), non-essential amino acids (Invitrogen), l-glutamine (Invitrogen), and OPI media supplement (Sigma) containing 0.15 mg of oxalacetate, 0.5 g of pyruvate and 8.2 mg of bovine insulin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | See affymetrix protocol.
| | Sample_hyb_protocol | See affymetrix protocol.
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew ,P.,Rice
| | Sample_contact_laboratory | Rice
| | Sample_contact_department | Molecular Virology and Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77025
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257593/suppl/GSM257593.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257593/suppl/GSM257593.CHP.gz
| | Sample_series_id | GSE10233
| | Sample_series_id | GSE11462
| | Sample_data_row_count | 54675
| | |
|
GSM257617 | GPL570 |
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MM6 control shRNA PMA treated 1
|
MM6 cell line
|
Monocytic Cell line
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 6489.
|
| Sample_geo_accession | GSM257617
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jan 17 2008
| | Sample_last_update_date | May 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MM6 cells were transduced with a control shRNA and then treated with 10 ng/ml PMA.
| | Sample_growth_protocol_ch1 | MM6 cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone), ), non-essential amino acids (Invitrogen), l-glutamine (Invitrogen), and OPI media supplement (Sigma) containing 0.15 mg of oxalacetate, 0.5 g of pyruvate and 8.2 mg of bovine insulin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | See affymetrix protocol.
| | Sample_hyb_protocol | See affymetrix protocol.
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew ,P.,Rice
| | Sample_contact_laboratory | Rice
| | Sample_contact_department | Molecular Virology and Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77025
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257617/suppl/GSM257617.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257617/suppl/GSM257617.CHP.gz
| | Sample_series_id | GSE10233
| | Sample_series_id | GSE11462
| | Sample_data_row_count | 54675
| | |
|
GSM257620 | GPL570 |
|
MM6 control shRNA PMA treated 2
|
Mono Mac 6 cells
|
Monocytic Cell line
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 7987.
|
| Sample_geo_accession | GSM257620
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jan 17 2008
| | Sample_last_update_date | May 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MM6 cells were transduced with a control shRNA and then treated with 10 ng/ml PMA.
| | Sample_growth_protocol_ch1 | MM6 cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone), ), non-essential amino acids (Invitrogen), l-glutamine (Invitrogen), and OPI media supplement (Sigma) containing 0.15 mg of oxalacetate, 0.5 g of pyruvate and 8.2 mg of bovine insulin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | See affymetrix protocol.
| | Sample_hyb_protocol | See affymetrix protocol.
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew ,P.,Rice
| | Sample_contact_laboratory | Rice
| | Sample_contact_department | Molecular Virology and Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77025
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257620/suppl/GSM257620.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257620/suppl/GSM257620.CHP.gz
| | Sample_series_id | GSE10233
| | Sample_series_id | GSE11462
| | Sample_data_row_count | 54675
| | |
|
GSM257622 | GPL570 |
|
MM6 control shRNA PMA treated 3
|
Mono Mac 6 cells
|
Monocytic cell line
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 7988.
|
| Sample_geo_accession | GSM257622
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jan 17 2008
| | Sample_last_update_date | May 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MM6 cells were transduced with a control shRNA and then treated with 10 ng/ml PMA.
| | Sample_growth_protocol_ch1 | MM6 cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone), ), non-essential amino acids (Invitrogen), l-glutamine (Invitrogen), and OPI media supplement (Sigma) containing 0.15 mg of oxalacetate, 0.5 g of pyruvate and 8.2 mg of bovine insulin.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | See affymetrix protocol.
| | Sample_hyb_protocol | See affymetrix protocol.
| | Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrew ,P.,Rice
| | Sample_contact_laboratory | Rice
| | Sample_contact_department | Molecular Virology and Microbiology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77025
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257622/suppl/GSM257622.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257622/suppl/GSM257622.CHP.gz
| | Sample_series_id | GSE10233
| | Sample_series_id | GSE11462
| | Sample_data_row_count | 54675
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