Search results for the GEO ID: GSE10270 |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM259339 | GPL570 |
|
A6; PATIENT_ID: PA4; CONDITION: co-cultured, E2
|
Breast
|
SAMPLE_NAME: A6
PATIENT_ID: PA4
CONDITION: co-cultured, 17-beta estradiol (E2)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259339
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259339/suppl/GSM259339.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259341 | GPL570 |
|
A7; PATIENT_ID: PA4; CONDITION: co-cultured, E2, PG
|
Breast
|
SAMPLE_NAME: A7
PATIENT_ID: PA4
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259341
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259341/suppl/GSM259341.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259342 | GPL570 |
|
A8; PATIENT_ID: PA4; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: A8
PATIENT_ID: PA4
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259342
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259342/suppl/GSM259342.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259345 | GPL570 |
|
B2; PATIENT_ID: PA7; CONDITION: co-cultured, E2
|
Breast
|
SAMPLE_NAME: B2
PATIENT_ID: PA7
CONDITION: co-cultured, 17-beta estradiol (E2)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259345
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259345/suppl/GSM259345.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259346 | GPL570 |
|
B3; PATIENT_ID: PA7; CONDITION: co-cultured, E2, PG
|
Breast
|
SAMPLE_NAME: B3
PATIENT_ID: PA7
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259346
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259346/suppl/GSM259346.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259349 | GPL570 |
|
B4; PATIENT_ID: PA7; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: B4
PATIENT_ID: PA7
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259349
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259349/suppl/GSM259349.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259359 | GPL570 |
|
B8; PATIENT_ID: PA12; CONDITION: co-cultured, E2
|
Breast
|
SAMPLE_NAME: B8
PATIENT_ID: PA12
CONDITION: co-cultured, 17-beta estradiol (E2)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259359
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259359/suppl/GSM259359.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259360 | GPL570 |
|
B9; PATIENT_ID: PA12; CONDITION: co-cultured, E2, PG
|
Breast
|
SAMPLE_NAME: B9
PATIENT_ID: PA12
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259360
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259360/suppl/GSM259360.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259361 | GPL570 |
|
C1; PATIENT_ID: PA12; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: C1
PATIENT_ID: PA12
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259361
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259361/suppl/GSM259361.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259365 | GPL570 |
|
C5; PATIENT_ID: PA13; CONDITION: co-cultured, E2
|
Breast
|
SAMPLE_NAME: C5
PATIENT_ID: PA13
CONDITION: co-cultured, 17-beta estradiol (E2)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259365
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259365/suppl/GSM259365.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259367 | GPL570 |
|
C7; PATIENT_ID: PA13; CONDITION: co-cultured, E2, PG
|
Breast
|
SAMPLE_NAME: C7
PATIENT_ID: PA13
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259367
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259367/suppl/GSM259367.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259368 | GPL570 |
|
C8; PATIENT_ID: PA13; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: C8
PATIENT_ID: PA13
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259368
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259368/suppl/GSM259368.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259377 | GPL570 |
|
D9; PATIENT_ID: PA16; CONDITION: co-cultured, E2
|
Breast
|
SAMPLE_NAME: D9
PATIENT_ID: PA16
CONDITION: co-cultured, 17-beta estradiol (E2)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259377
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259377/suppl/GSM259377.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259379 | GPL570 |
|
E2; PATIENT_ID: PA16; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: E2
PATIENT_ID: PA16
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259379
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259379/suppl/GSM259379.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259388 | GPL570 |
|
F2; PATIENT_ID: PA18; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: F2
PATIENT_ID: PA18
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259388
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259388/suppl/GSM259388.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259392 | GPL570 |
|
F6; PATIENT_ID: PA19; CONDITION: co-cultured, E2
|
Breast
|
SAMPLE_NAME: F6
PATIENT_ID: PA19
CONDITION: co-cultured, 17-beta estradiol (E2)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259392
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259392/suppl/GSM259392.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259393 | GPL570 |
|
F7; PATIENT_ID: PA19; CONDITION: co-cultured, E2, PG
|
Breast
|
SAMPLE_NAME: F7
PATIENT_ID: PA19
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259393
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259393/suppl/GSM259393.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259394 | GPL570 |
|
F8; PATIENT_ID: PA19; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: F8
PATIENT_ID: PA19
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259394
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259394/suppl/GSM259394.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259395 | GPL570 |
|
G3; PATIENT_ID: PA20; CONDITION: co-cultured, E2
|
Breast
|
SAMPLE_NAME: G3
PATIENT_ID: PA20
CONDITION: co-cultured, 17-beta estradiol (E2)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259395
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259395/suppl/GSM259395.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259396 | GPL570 |
|
G4; PATIENT_ID: PA20; CONDITION: co-cultured, E2, PG
|
Breast
|
SAMPLE_NAME: G4
PATIENT_ID: PA20
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259396
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259396/suppl/GSM259396.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
GSM259397 | GPL570 |
|
G5; PATIENT_ID: PA20; CONDITION: co-cultured, E2, PG, BPA
|
Breast
|
SAMPLE_NAME: G5
PATIENT_ID: PA20
CONDITION: co-cultured, 17-beta estradiol (E2), progesterone (PG), bisphenol A (BPA)
|
Breast epithelial cells from contralateral breast tissue of patients diagnosed with a primary breast lesion
|
Sample_geo_accession | GSM259397
| Sample_status | Public on Jan 26 2008
| Sample_submission_date | Jan 24 2008
| Sample_last_update_date | Sep 30 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total epithelial cell RNA was directly extracted from duplicate wells of each treatment using the Rneasy kit (Qiagen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA synthesis was performed with 2 µg of total cellular RNA, and labelled based on the protocol outlined by Affymetrix Inc. (Santa Clara, CA), with few modifications
| Sample_hyb_protocol | standard Affymetrix procedure
| Sample_scan_protocol | standard Affymetrix procedure
| Sample_data_processing | dChip
| Sample_platform_id | GPL570
| Sample_contact_name | Junhee,,Seok
| Sample_contact_email | jseok@stanford.edu
| Sample_contact_institute | Stanford University
| Sample_contact_address | 318 Campus Drive W310 - Davis Lab
| Sample_contact_city | Stanford
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94305
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM259nnn/GSM259397/suppl/GSM259397.CEL.gz
| Sample_series_id | GSE10270
| Sample_data_row_count | 54675
| |
|
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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