Search results for the GEO ID: GSE10299  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM260249 | GPL570 |
|
SQ20B (Go6976 NoTx1)
|
SQ20B cells control
|
CONTROL
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260249
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260249/suppl/GSM260249.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260250 | GPL570 |
|
SQ20B (Go6976 NoTx2)
|
SQ20B cells control
|
CONTROL
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260250
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260250/suppl/GSM260250.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260251 | GPL570 |
|
SQ20B (Go6976 NoTx3)
|
SQ20B cells control
|
CONTROL
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260251
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260251/suppl/GSM260251.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260252 | GPL570 |
|
SQ20B (Go6976 12hr Tx1)
|
SQ20B cells 12hr 100nm Gö6976
|
cells 12hr 100nm Gö6976
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260252
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260252/suppl/GSM260252.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260253 | GPL570 |
|
SQ20B (Go6976 12hr Tx2)
|
SQ20B cells 12hr 100nm Gö6976
|
cells 12hr 100nm Gö6976
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260253
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260253/suppl/GSM260253.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260254 | GPL570 |
|
SQ20B (Go6976 12hr Tx3)
|
SQ20B cells 12hr 100nm Gö6976
|
cells 12hr 100nm Gö6976
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260254
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260254/suppl/GSM260254.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260255 | GPL570 |
|
SQ20B (Go6976 24hr Tx1)
|
SQ20B cells 24hr 100nm Gö6976
|
cells 24hr 100nm Gö6976
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260255
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260255/suppl/GSM260255.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260256 | GPL570 |
|
SQ20B (Go6976 24hr Tx2)
|
SQ20B cells 24hr 100nm Gö6976
|
cells 24hr 100nm Gö6976
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260256
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260256/suppl/GSM260256.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
GSM260257 | GPL570 |
|
SQ20B (Go6976 24hr Tx3)
|
SQ20B cells 24hr 100nm Gö6976
|
cells 24hr 100nm Gö6976
|
NuGEN Ovation
|
| Sample_geo_accession | GSM260257
| | Sample_status | Public on Mar 22 2009
| | Sample_submission_date | Jan 28 2008
| | Sample_last_update_date | Mar 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | control, 12 or 24hr 100nm Gö6976 exposure
| | Sample_growth_protocol_ch1 | SQ20B (5 x 10e6) tumor cells were injected into the right hind limbs of female athymic nude mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Mini kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation Biotin RNA Amplification and Labeling Kit (NuGEN, San Carlos, CA)
| | Sample_hyb_protocol | manufacturer’s recommendations
| | Sample_scan_protocol | manufacturer’s recommendations
| | Sample_data_processing | GC-RMA (Bioconductor)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christine,H.,Chung
| | Sample_contact_email | christine.chung@vanderbilt.edu
| | Sample_contact_phone | 615-322-4967
| | Sample_contact_fax | 615343-7602
| | Sample_contact_laboratory | Chung
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | Vanderbilt University
| | Sample_contact_address | 777 PRB
| | Sample_contact_city | Nashville
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 37232-6307
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260257/suppl/GSM260257.CEL.gz
| | Sample_series_id | GSE10299
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
