Search results for the GEO ID: GSE10309 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM260533 | GPL570 |
|
CL1-5, biological rep1
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Human lung adenocarcinoma cell line CL1-5 vector control
|
Gender: male
|
The mRNA profiles from vector control transfectants and CLDN1 overexpressed transfectants were quantitatively determined.
|
Sample_geo_accession | GSM260533
| Sample_status | Public on Dec 23 2008
| Sample_submission_date | Jan 29 2008
| Sample_last_update_date | Dec 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Gentamycin (G418) 400 μg/ml
| Sample_growth_protocol_ch1 | Human lung adenocarcinoma cell lines of CL1-5 CLDN1-transfected and CL1-5 vector control were grown in RPMI 1640 with 10% fetal bovine serum at 37°C, 20% O2, 5% CO2 and 400 μg/ml G418.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Total RNAs extracted using TRIZOL reagent were quantified spectrophotometrically. The cDNA synthesis was carried out by using SUPERSCRIPTTM one-step RT-PCR kit (Invitrogen). For the reverse transcription step, the whole 5 ul of the resuspended RNAs were incubated for 60 min at 42oC, then 15 min at 72oC in 50 ul of reaction mixture containing 25 ul of 2x Reaction Mix (Invitrogen) and 1 ul of RT/PLANTINUM Taq Mix (Invitrogen). 28.5 ul of the cDNAs present in the 50 ul RT reaction mixture purified by Microarray Target Purification Kit (Roche Applied Science, Indianapolis, ID, USA, http://www.roche-applies-science.com) were used as templates to amplify cDNA by Microarray Target Amplification Kit. The amplified cDNAs were purified by Microarray Target Purification Kit, and complementary RNAs (cRNAs) were synthesized from 200 ng cDNA with Microarray RNA Target Synthesis Kit (Roche Applied Science).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms purified cRNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45oC on Affymetrix Human Genome U133 plus 2.0 GeneChip. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips from the hybridization experiments were read by the Affymetrix GeneChip scanner 3000.
| Sample_data_processing | The data were processed by GeneSpring software version 7.2 GC-RMA preprocessor to use on the CEL files
| Sample_platform_id | GPL570
| Sample_contact_name | Sung-Liang,,Yu
| Sample_contact_email | slyu@ntu.edu.tw
| Sample_contact_phone | 886-2-23958341
| Sample_contact_fax | 886-2-23958341
| Sample_contact_laboratory | Microarray Core Facility
| Sample_contact_department | Clinical Laboratory Sciences and Medical Biotechnology
| Sample_contact_institute | National Taiwan University
| Sample_contact_address | Jen Ai Road Section1
| Sample_contact_city | Taipei
| Sample_contact_zip/postal_code | 100
| Sample_contact_country | Taiwan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260533/suppl/GSM260533.CEL.gz
| Sample_series_id | GSE10309
| Sample_data_row_count | 54675
| |
|
GSM260534 | GPL570 |
|
CL1-5, biological rep2
|
Human lung adenocarcinoma cell line CL1-5 vector control
|
Gender: male
|
The mRNA profiles from vector control transfectants and CLDN1 overexpressed transfectants were quantitatively determined.
|
Sample_geo_accession | GSM260534
| Sample_status | Public on Dec 23 2008
| Sample_submission_date | Jan 29 2008
| Sample_last_update_date | Dec 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Gentamycin (G418) 400 μg/ml
| Sample_growth_protocol_ch1 | Human lung adenocarcinoma cell lines of CL1-5 CLDN1-transfected and CL1-5 vector control were grown in RPMI 1640 with 10% fetal bovine serum at 37°C, 20% O2, 5% CO2 and 400 μg/ml G418.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Total RNAs extracted using TRIZOL reagent were quantified spectrophotometrically. The cDNA synthesis was carried out by using SUPERSCRIPTTM one-step RT-PCR kit (Invitrogen). For the reverse transcription step, the whole 5 ul of the resuspended RNAs were incubated for 60 min at 42oC, then 15 min at 72oC in 50 ul of reaction mixture containing 25 ul of 2x Reaction Mix (Invitrogen) and 1 ul of RT/PLANTINUM Taq Mix (Invitrogen). 28.5 ul of the cDNAs present in the 50 ul RT reaction mixture purified by Microarray Target Purification Kit (Roche Applied Science, Indianapolis, ID, USA, http://www.roche-applies-science.com) were used as templates to amplify cDNA by Microarray Target Amplification Kit. The amplified cDNAs were purified by Microarray Target Purification Kit, and complementary RNAs (cRNAs) were synthesized from 200 ng cDNA with Microarray RNA Target Synthesis Kit (Roche Applied Science).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms purified cRNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45oC on Affymetrix Human Genome U133 plus 2.0 GeneChip. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips from the hybridization experiments were read by the Affymetrix GeneChip scanner 3000.
| Sample_data_processing | The data were processed by GeneSpring software version 7.2 GC-RMA preprocessor to use on the CEL files
| Sample_platform_id | GPL570
| Sample_contact_name | Sung-Liang,,Yu
| Sample_contact_email | slyu@ntu.edu.tw
| Sample_contact_phone | 886-2-23958341
| Sample_contact_fax | 886-2-23958341
| Sample_contact_laboratory | Microarray Core Facility
| Sample_contact_department | Clinical Laboratory Sciences and Medical Biotechnology
| Sample_contact_institute | National Taiwan University
| Sample_contact_address | Jen Ai Road Section1
| Sample_contact_city | Taipei
| Sample_contact_zip/postal_code | 100
| Sample_contact_country | Taiwan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260534/suppl/GSM260534.CEL.gz
| Sample_series_id | GSE10309
| Sample_data_row_count | 54675
| |
|
GSM260535 | GPL570 |
|
CLDN1 overexpressed CL1-5, biological rep1
|
Human lung adenocarcinoma cell line CL1-5 CLDN1-transfected
|
Gender: male
|
The mRNA profiles from vector control transfectants and CLDN1 overexpressed transfectants were quantitatively determined.
|
Sample_geo_accession | GSM260535
| Sample_status | Public on Dec 23 2008
| Sample_submission_date | Jan 29 2008
| Sample_last_update_date | Dec 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Gentamycin (G418) 400 μg/ml
| Sample_growth_protocol_ch1 | Human lung adenocarcinoma cell lines of CL1-5 CLDN1-transfected and CL1-5 vector control were grown in RPMI 1640 with 10% fetal bovine serum at 37°C, 20% O2, 5% CO2 and 400 μg/ml G418.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Total RNAs extracted using TRIZOL reagent were quantified spectrophotometrically. The cDNA synthesis was carried out by using SUPERSCRIPTTM one-step RT-PCR kit (Invitrogen). For the reverse transcription step, the whole 5 ul of the resuspended RNAs were incubated for 60 min at 42oC, then 15 min at 72oC in 50 ul of reaction mixture containing 25 ul of 2x Reaction Mix (Invitrogen) and 1 ul of RT/PLANTINUM Taq Mix (Invitrogen). 28.5 ul of the cDNAs present in the 50 ul RT reaction mixture purified by Microarray Target Purification Kit (Roche Applied Science, Indianapolis, ID, USA, http://www.roche-applies-science.com) were used as templates to amplify cDNA by Microarray Target Amplification Kit. The amplified cDNAs were purified by Microarray Target Purification Kit, and complementary RNAs (cRNAs) were synthesized from 200 ng cDNA with Microarray RNA Target Synthesis Kit (Roche Applied Science).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms purified cRNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45oC on Affymetrix Human Genome U133 plus 2.0 GeneChip. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips from the hybridization experiments were read by the Affymetrix GeneChip scanner 3000.
| Sample_data_processing | The data were processed by GeneSpring software version 7.2 GC-RMA preprocessor to use on the CEL files
| Sample_platform_id | GPL570
| Sample_contact_name | Sung-Liang,,Yu
| Sample_contact_email | slyu@ntu.edu.tw
| Sample_contact_phone | 886-2-23958341
| Sample_contact_fax | 886-2-23958341
| Sample_contact_laboratory | Microarray Core Facility
| Sample_contact_department | Clinical Laboratory Sciences and Medical Biotechnology
| Sample_contact_institute | National Taiwan University
| Sample_contact_address | Jen Ai Road Section1
| Sample_contact_city | Taipei
| Sample_contact_zip/postal_code | 100
| Sample_contact_country | Taiwan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260535/suppl/GSM260535.CEL.gz
| Sample_series_id | GSE10309
| Sample_data_row_count | 54675
| |
|
GSM260536 | GPL570 |
|
CLDN1 overexpressed CL1-5, biological rep2
|
Human lung adenocarcinoma cell line CL1-5 CLDN1-transfected
|
Gender: male
|
The mRNA profiles from vector control transfectants and CLDN1 overexpressed transfectants were quantitatively determined.
|
Sample_geo_accession | GSM260536
| Sample_status | Public on Dec 23 2008
| Sample_submission_date | Jan 29 2008
| Sample_last_update_date | Dec 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Gentamycin (G418) 400 μg/ml
| Sample_growth_protocol_ch1 | Human lung adenocarcinoma cell lines of CL1-5 CLDN1-transfected and CL1-5 vector control were grown in RPMI 1640 with 10% fetal bovine serum at 37°C, 20% O2, 5% CO2 and 400 μg/ml G418.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions. Total RNAs extracted using TRIZOL reagent were quantified spectrophotometrically. The cDNA synthesis was carried out by using SUPERSCRIPTTM one-step RT-PCR kit (Invitrogen). For the reverse transcription step, the whole 5 ul of the resuspended RNAs were incubated for 60 min at 42oC, then 15 min at 72oC in 50 ul of reaction mixture containing 25 ul of 2x Reaction Mix (Invitrogen) and 1 ul of RT/PLANTINUM Taq Mix (Invitrogen). 28.5 ul of the cDNAs present in the 50 ul RT reaction mixture purified by Microarray Target Purification Kit (Roche Applied Science, Indianapolis, ID, USA, http://www.roche-applies-science.com) were used as templates to amplify cDNA by Microarray Target Amplification Kit. The amplified cDNAs were purified by Microarray Target Purification Kit, and complementary RNAs (cRNAs) were synthesized from 200 ng cDNA with Microarray RNA Target Synthesis Kit (Roche Applied Science).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms purified cRNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 micrograms of cRNA were hybridized for 16 hr at 45oC on Affymetrix Human Genome U133 plus 2.0 GeneChip. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips from the hybridization experiments were read by the Affymetrix GeneChip scanner 3000.
| Sample_data_processing | The data were processed by GeneSpring software version 7.2 GC-RMA preprocessor to use on the CEL files
| Sample_platform_id | GPL570
| Sample_contact_name | Sung-Liang,,Yu
| Sample_contact_email | slyu@ntu.edu.tw
| Sample_contact_phone | 886-2-23958341
| Sample_contact_fax | 886-2-23958341
| Sample_contact_laboratory | Microarray Core Facility
| Sample_contact_department | Clinical Laboratory Sciences and Medical Biotechnology
| Sample_contact_institute | National Taiwan University
| Sample_contact_address | Jen Ai Road Section1
| Sample_contact_city | Taipei
| Sample_contact_zip/postal_code | 100
| Sample_contact_country | Taiwan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM260nnn/GSM260536/suppl/GSM260536.CEL.gz
| Sample_series_id | GSE10309
| Sample_data_row_count | 54675
| |
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