Search results for the GEO ID: GSE10393  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM262717 | GPL3921 |
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Huh7_TGFbeta_minus_1
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hepatocellular carcinoma cell line
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untreated with TGF-beta
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Hepatocellular carcinoma cell lines treated or untreated with TGF-beta.
|
| Sample_geo_accession | GSM262717
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | Feb 05 2008
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with TGFbeta (R&D systems) and harvested after 48 hours of incubation.
| | Sample_growth_protocol_ch1 | A human HCC cell line, Huh-7, was obtained from the Riken Bioresource Center (Tsukuba, Japan). The cell line was grown in Dulbecco’s modified Eagle medium (American Type Culture Collection) supplemented with 10% heat-inactivated fetal bovine serum at 37C in a 5% CO2 atmosphere.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from confluent 10cm culture dish using TRIzol reagent (Invitrogen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Refer to the Affymetrix Assay System Manual
| | Sample_hyb_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_scan_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_data_processing | Raw scan data were normalized using rma() function in Bioconductor's affy package (http://www.bioconductor.org/). For the analysis in the manuscript, the normalized signals were further collapsed into gene symbols by taking median values.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Yujin,,Hoshida
| | Sample_contact_email | yujin.hoshida@mssm.edu
| | Sample_contact_institute | Icahn School of Medicine at Mount Sinai
| | Sample_contact_address | 1470 Madison Ave, Box 1123
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM262nnn/GSM262717/suppl/GSM262717.CEL.gz
| | Sample_series_id | GSE10393
| | Sample_data_row_count | 22215
| | |
|
GSM262718 | GPL3921 |
|
Huh7_TGFbeta_minus_2
|
hepatocellular carcinoma cell line
|
untreated with TGF-beta
|
Hepatocellular carcinoma cell lines treated or untreated with TGF-beta.
|
| Sample_geo_accession | GSM262718
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | Feb 05 2008
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with TGFbeta (R&D systems) and harvested after 48 hours of incubation.
| | Sample_growth_protocol_ch1 | A human HCC cell line, Huh-7, was obtained from the Riken Bioresource Center (Tsukuba, Japan). The cell line was grown in Dulbecco’s modified Eagle medium (American Type Culture Collection) supplemented with 10% heat-inactivated fetal bovine serum at 37C in a 5% CO2 atmosphere.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from confluent 10cm culture dish using TRIzol reagent (Invitrogen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Refer to the Affymetrix Assay System Manual
| | Sample_hyb_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_scan_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_data_processing | Raw scan data were normalized using rma() function in Bioconductor's affy package (http://www.bioconductor.org/). For the analysis in the manuscript, the normalized signals were further collapsed into gene symbols by taking median values.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Yujin,,Hoshida
| | Sample_contact_email | yujin.hoshida@mssm.edu
| | Sample_contact_institute | Icahn School of Medicine at Mount Sinai
| | Sample_contact_address | 1470 Madison Ave, Box 1123
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM262nnn/GSM262718/suppl/GSM262718.CEL.gz
| | Sample_series_id | GSE10393
| | Sample_data_row_count | 22215
| | |
|
GSM262719 | GPL3921 |
|
Huh7_TGFbeta_plus_1
|
hepatocellular carcinoma cell line
|
treated with TGF-beta
|
Hepatocellular carcinoma cell lines treated or untreated with TGF-beta.
|
| Sample_geo_accession | GSM262719
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | Feb 05 2008
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with TGFbeta (R&D systems) and harvested after 48 hours of incubation.
| | Sample_growth_protocol_ch1 | A human HCC cell line, Huh-7, was obtained from the Riken Bioresource Center (Tsukuba, Japan). The cell line was grown in Dulbecco’s modified Eagle medium (American Type Culture Collection) supplemented with 10% heat-inactivated fetal bovine serum at 37C in a 5% CO2 atmosphere.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from confluent 10cm culture dish using TRIzol reagent (Invitrogen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Refer to the Affymetrix Assay System Manual
| | Sample_hyb_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_scan_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_data_processing | Raw scan data were normalized using rma() function in Bioconductor's affy package (http://www.bioconductor.org/). For the analysis in the manuscript, the normalized signals were further collapsed into gene symbols by taking median values.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Yujin,,Hoshida
| | Sample_contact_email | yujin.hoshida@mssm.edu
| | Sample_contact_institute | Icahn School of Medicine at Mount Sinai
| | Sample_contact_address | 1470 Madison Ave, Box 1123
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM262nnn/GSM262719/suppl/GSM262719.CEL.gz
| | Sample_series_id | GSE10393
| | Sample_data_row_count | 22215
| | |
|
GSM262720 | GPL3921 |
|
Huh7_TGFbeta_plus_2
|
hepatocellular carcinoma cell line
|
treated with TGF-beta
|
Hepatocellular carcinoma cell lines treated or untreated with TGF-beta.
|
| Sample_geo_accession | GSM262720
| | Sample_status | Public on Sep 08 2009
| | Sample_submission_date | Feb 05 2008
| | Sample_last_update_date | Sep 08 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with TGFbeta (R&D systems) and harvested after 48 hours of incubation.
| | Sample_growth_protocol_ch1 | A human HCC cell line, Huh-7, was obtained from the Riken Bioresource Center (Tsukuba, Japan). The cell line was grown in Dulbecco’s modified Eagle medium (American Type Culture Collection) supplemented with 10% heat-inactivated fetal bovine serum at 37C in a 5% CO2 atmosphere.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from confluent 10cm culture dish using TRIzol reagent (Invitrogen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Refer to the Affymetrix Assay System Manual
| | Sample_hyb_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_scan_protocol | Refer to the Affymetrix Assay System Manual
| | Sample_data_processing | Raw scan data were normalized using rma() function in Bioconductor's affy package (http://www.bioconductor.org/). For the analysis in the manuscript, the normalized signals were further collapsed into gene symbols by taking median values.
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Yujin,,Hoshida
| | Sample_contact_email | yujin.hoshida@mssm.edu
| | Sample_contact_institute | Icahn School of Medicine at Mount Sinai
| | Sample_contact_address | 1470 Madison Ave, Box 1123
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10029
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM262nnn/GSM262720/suppl/GSM262720.CEL.gz
| | Sample_series_id | GSE10393
| | Sample_data_row_count | 22215
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