Result

Search results for the GEO ID: GSE10444

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM265494

GPL570

dental pulp cells (DP2) at passage 4

DP2-P4, human dental pulp stem cells (hDPSCs) (14 year-old)

Gene expression data from samples of human dental pulp stem cells

Sample_geo_accession	GSM265494
Sample_status	Public on Feb 14 2008
Sample_submission_date	Feb 13 2008
Sample_last_update_date	Aug 15 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Normal human third molars were extracted at Gifu University Medical Hospital after informed consent had been obtained from patient, with a protocol approved by the Institutional Review Board.
Sample_growth_protocol_ch1	The isolated hDPSCs were cultured in MSCGM medium (Cambrex, Walkersville, MD, USA).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from the cells with an RNeasy Plus Mini Kit (Qiagen, Valencia, CA, USA). Extraction was performed according to the manufacturer's instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	standard Affymetrix procedures
Sample_hyb_protocol	standard Affymetrix procedures
Sample_scan_protocol	standard Affymetrix procedures
Sample_data_processing	Affymetrix Microarray Suite version 5.0.
Sample_data_processing	The AD levels were usually normalized with a median value of the whole transcripts in each GeneChip for the comparison between passage 4 and passage 10 cells. They were normalized with the median values of the whole transcripts in each genes on GeneChip for the comparison between passage 4 and passage 10 cells.
Sample_data_processing	The level of gene expression was determined as the average difference (AD) using the GeneChip software.
Sample_platform_id	GPL570
Sample_contact_name	Ken-ichi,,Tezuka
Sample_contact_email	tezuka@gifu-u.ac.jp
Sample_contact_phone	+81-58-230-6476
Sample_contact_department	Gifu University Graduate School of Medicine
Sample_contact_institute	Gifu University Graduate School of Medicine
Sample_contact_address	1-1 Yanagido
Sample_contact_city	Gifu City
Sample_contact_state	Gifu
Sample_contact_zip/postal_code	501-1194
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265494/suppl/GSM265494.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265494/suppl/GSM265494.CHP.gz
Sample_relation	Reanalyzed by: GSE49910
Sample_series_id	GSE10444
Sample_data_row_count	54675

GSM265495

GPL570

dental pulp cells (DP2) at passage 10

DP2-P10, human dental pulp stem cells (hDPSCs) (14 year-old)

Gene expression data from samples of human dental pulp stem cells

Sample_geo_accession	GSM265495
Sample_status	Public on Feb 14 2008
Sample_submission_date	Feb 13 2008
Sample_last_update_date	Aug 15 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Normal human third molars were extracted at Gifu University Medical Hospital after informed consent had been obtained from patient, with a protocol approved by the Institutional Review Board.
Sample_growth_protocol_ch1	The isolated hDPSCs were cultured in MSCGM medium (Cambrex, Walkersville, MD, USA).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from the cells with an RNeasy Plus Mini Kit (Qiagen, Valencia, CA, USA). Extraction was performed according to the manufacturer's instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	standard Affymetrix procedures
Sample_hyb_protocol	standard Affymetrix procedures
Sample_scan_protocol	standard Affymetrix procedures
Sample_data_processing	Affymetrix Microarray Suite version 5.0.
Sample_data_processing	The AD levels were usually normalized with a median value of the whole transcripts in each GeneChip for the comparison between passage 4 and passage 10 cells. They were normalized with the median values of the whole transcripts in each genes on GeneChip for the comparison between passage 4 and passage 10 cells.
Sample_data_processing	The level of gene expression was determined as the average difference (AD) using the GeneChip software.
Sample_platform_id	GPL570
Sample_contact_name	Ken-ichi,,Tezuka
Sample_contact_email	tezuka@gifu-u.ac.jp
Sample_contact_phone	+81-58-230-6476
Sample_contact_department	Gifu University Graduate School of Medicine
Sample_contact_institute	Gifu University Graduate School of Medicine
Sample_contact_address	1-1 Yanagido
Sample_contact_city	Gifu City
Sample_contact_state	Gifu
Sample_contact_zip/postal_code	501-1194
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265495/suppl/GSM265495.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265495/suppl/GSM265495.CHP.gz
Sample_relation	Reanalyzed by: GSE49910
Sample_series_id	GSE10444
Sample_data_row_count	54675

GSM265496

GPL570

dental pulp cells (DP28) at passage 4

DP28-P4, human dental pulp stem cells (hDPSCs) (14 year-old)

Gene expression data from samples of human dental pulp stem cells

Sample_geo_accession	GSM265496
Sample_status	Public on Feb 14 2008
Sample_submission_date	Feb 13 2008
Sample_last_update_date	Aug 15 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Normal human third molars were extracted at Gifu University Medical Hospital after informed consent had been obtained from patient, with a protocol approved by the Institutional Review Board.
Sample_growth_protocol_ch1	The isolated hDPSCs were cultured in MSCGM medium (Cambrex, Walkersville, MD, USA).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from the cells with an RNeasy Plus Mini Kit (Qiagen, Valencia, CA, USA). Extraction was performed according to the manufacturer's instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	standard Affymetrix procedures
Sample_hyb_protocol	standard Affymetrix procedures
Sample_scan_protocol	standard Affymetrix procedures
Sample_data_processing	Affymetrix Microarray Suite version 5.0.
Sample_data_processing	The AD levels were usually normalized with a median value of the whole transcripts in each GeneChip for the comparison between passage 4 and passage 10 cells. They were normalized with the median values of the whole transcripts in each genes on GeneChip for the comparison between passage 4 and passage 10 cells.
Sample_data_processing	The level of gene expression was determined as the average difference (AD) using the GeneChip software.
Sample_platform_id	GPL570
Sample_contact_name	Ken-ichi,,Tezuka
Sample_contact_email	tezuka@gifu-u.ac.jp
Sample_contact_phone	+81-58-230-6476
Sample_contact_department	Gifu University Graduate School of Medicine
Sample_contact_institute	Gifu University Graduate School of Medicine
Sample_contact_address	1-1 Yanagido
Sample_contact_city	Gifu City
Sample_contact_state	Gifu
Sample_contact_zip/postal_code	501-1194
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265496/suppl/GSM265496.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265496/suppl/GSM265496.CHP.gz
Sample_relation	Reanalyzed by: GSE49910
Sample_series_id	GSE10444
Sample_data_row_count	54675

GSM265497

GPL570

dental pulp cells (DP28) at passage 10

DP28-P10, human dental pulp stem cells (hDPSCs) (14 year-old)

Gene expression data from samples of human dental pulp stem cells

Sample_geo_accession	GSM265497
Sample_status	Public on Feb 14 2008
Sample_submission_date	Feb 13 2008
Sample_last_update_date	Aug 15 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Normal human third molars were extracted at Gifu University Medical Hospital after informed consent had been obtained from patient, with a protocol approved by the Institutional Review Board.
Sample_growth_protocol_ch1	The isolated hDPSCs were cultured in MSCGM medium (Cambrex, Walkersville, MD, USA).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from the cells with an RNeasy Plus Mini Kit (Qiagen, Valencia, CA, USA). Extraction was performed according to the manufacturer's instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	standard Affymetrix procedures
Sample_hyb_protocol	standard Affymetrix procedures
Sample_scan_protocol	standard Affymetrix procedures
Sample_data_processing	Affymetrix Microarray Suite version 5.0.
Sample_data_processing	The AD levels were usually normalized with a median value of the whole transcripts in each GeneChip for the comparison between passage 4 and passage 10 cells. They were normalized with the median values of the whole transcripts in each genes on GeneChip for the comparison between passage 4 and passage 10 cells.
Sample_data_processing	The level of gene expression was determined as the average difference (AD) using the GeneChip software.
Sample_platform_id	GPL570
Sample_contact_name	Ken-ichi,,Tezuka
Sample_contact_email	tezuka@gifu-u.ac.jp
Sample_contact_phone	+81-58-230-6476
Sample_contact_department	Gifu University Graduate School of Medicine
Sample_contact_institute	Gifu University Graduate School of Medicine
Sample_contact_address	1-1 Yanagido
Sample_contact_city	Gifu City
Sample_contact_state	Gifu
Sample_contact_zip/postal_code	501-1194
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265497/suppl/GSM265497.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265497/suppl/GSM265497.CHP.gz
Sample_relation	Reanalyzed by: GSE49910
Sample_series_id	GSE10444
Sample_data_row_count	54675

GSM265498

GPL570

dental pulp cells (DP31) at passage 4

DP31-P4, human dental pulp stem cells (hDPSCs) (14 year-old)

Gene expression data from samples of human dental pulp stem cells

Sample_geo_accession	GSM265498
Sample_status	Public on Feb 14 2008
Sample_submission_date	Feb 13 2008
Sample_last_update_date	Aug 15 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Normal human third molars were extracted at Gifu University Medical Hospital after informed consent had been obtained from patient, with a protocol approved by the Institutional Review Board.
Sample_growth_protocol_ch1	The isolated hDPSCs were cultured in MSCGM medium (Cambrex, Walkersville, MD, USA).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from the cells with an RNeasy Plus Mini Kit (Qiagen, Valencia, CA, USA). Extraction was performed according to the manufacturer's instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	standard Affymetrix procedures
Sample_hyb_protocol	standard Affymetrix procedures
Sample_scan_protocol	standard Affymetrix procedures
Sample_data_processing	Affymetrix Microarray Suite version 5.0.
Sample_data_processing	The AD levels were usually normalized with a median value of the whole transcripts in each GeneChip for the comparison between passage 4 and passage 10 cells. They were normalized with the median values of the whole transcripts in each genes on GeneChip for the comparison between passage 4 and passage 10 cells.
Sample_data_processing	The level of gene expression was determined as the average difference (AD) using the GeneChip software.
Sample_platform_id	GPL570
Sample_contact_name	Ken-ichi,,Tezuka
Sample_contact_email	tezuka@gifu-u.ac.jp
Sample_contact_phone	+81-58-230-6476
Sample_contact_department	Gifu University Graduate School of Medicine
Sample_contact_institute	Gifu University Graduate School of Medicine
Sample_contact_address	1-1 Yanagido
Sample_contact_city	Gifu City
Sample_contact_state	Gifu
Sample_contact_zip/postal_code	501-1194
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265498/suppl/GSM265498.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265498/suppl/GSM265498.CHP.gz
Sample_relation	Reanalyzed by: GSE49910
Sample_series_id	GSE10444
Sample_data_row_count	54675

GSM265499

GPL570

dental pulp cells (DP31) at passage 10

DP31-P10, human dental pulp stem cells (hDPSCs) (14 year-old)

Gene expression data from samples of human dental pulp stem cells

Sample_geo_accession	GSM265499
Sample_status	Public on Feb 14 2008
Sample_submission_date	Feb 13 2008
Sample_last_update_date	Aug 15 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Normal human third molars were extracted at Gifu University Medical Hospital after informed consent had been obtained from patient, with a protocol approved by the Institutional Review Board.
Sample_growth_protocol_ch1	The isolated hDPSCs were cultured in MSCGM medium (Cambrex, Walkersville, MD, USA).
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from the cells with an RNeasy Plus Mini Kit (Qiagen, Valencia, CA, USA). Extraction was performed according to the manufacturer's instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	standard Affymetrix procedures
Sample_hyb_protocol	standard Affymetrix procedures
Sample_scan_protocol	standard Affymetrix procedures
Sample_data_processing	Affymetrix Microarray Suite version 5.0.
Sample_data_processing	The AD levels were usually normalized with a median value of the whole transcripts in each GeneChip for the comparison between passage 4 and passage 10 cells. They were normalized with the median values of the whole transcripts in each genes on GeneChip for the comparison between passage 4 and passage 10 cells.
Sample_data_processing	The level of gene expression was determined as the average difference (AD) using the GeneChip software.
Sample_platform_id	GPL570
Sample_contact_name	Ken-ichi,,Tezuka
Sample_contact_email	tezuka@gifu-u.ac.jp
Sample_contact_phone	+81-58-230-6476
Sample_contact_department	Gifu University Graduate School of Medicine
Sample_contact_institute	Gifu University Graduate School of Medicine
Sample_contact_address	1-1 Yanagido
Sample_contact_city	Gifu City
Sample_contact_state	Gifu
Sample_contact_zip/postal_code	501-1194
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265499/suppl/GSM265499.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265499/suppl/GSM265499.CHP.gz
Sample_relation	Reanalyzed by: GSE49910
Sample_series_id	GSE10444
Sample_data_row_count	54675

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