Search results for the GEO ID: GSE10448 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM265380 | GPL341 |
|
liver-SpragueDawley-control rep1
|
liver, SpragueDawley, control
|
Age:10-12 weeks,Strain:Sprague/Dawley,Tissue: liver, Gender: Male
|
liver, SpragueDawley, control
|
Sample_geo_accession | GSM265380
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265380/suppl/GSM265380.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265380/suppl/GSM265380.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265380/suppl/GSM265380.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265381 | GPL341 |
|
liver-SpragueDawley-control rep2
|
liver, SpragueDawley, control
|
Age:10-12 weeks,Strain:Sprague/Dawley,Tissue: liver, Gender: Male
|
liver, SpragueDawley, control
|
Sample_geo_accession | GSM265381
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265381/suppl/GSM265381.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265381/suppl/GSM265381.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265381/suppl/GSM265381.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265382 | GPL341 |
|
liver-SpragueDawley-control rep3
|
liver, SpragueDawley, control
|
Age:10-12 weeks,Strain:Sprague/Dawley,Tissue: liver, Gender: Male
|
liver, SpragueDawley, control
|
Sample_geo_accession | GSM265382
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265382/suppl/GSM265382.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265382/suppl/GSM265382.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265382/suppl/GSM265382.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265383 | GPL341 |
|
liver-SpragueDawley-control rep4
|
liver, SpragueDawley, control
|
Age:10-12 weeks,Strain:Sprague/Dawley,Tissue: liver, Gender: Male
|
liver, SpragueDawley, control
|
Sample_geo_accession | GSM265383
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265383/suppl/GSM265383.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265383/suppl/GSM265383.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265383/suppl/GSM265383.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265384 | GPL341 |
|
liver-LE-cornoil-19h rep1
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
|
liver, LE, COil, 19 hours
|
Sample_geo_accession | GSM265384
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265384/suppl/GSM265384.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265384/suppl/GSM265384.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265384/suppl/GSM265384.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265385 | GPL341 |
|
liver-HW-cornoil-19h rep1
|
liver, HW, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:HW,Treatment:COil,Time:Hour19
|
liver, HW, COil, 19 hours
|
Sample_geo_accession | GSM265385
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265385/suppl/GSM265385.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265385/suppl/GSM265385.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265385/suppl/GSM265385.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265386 | GPL341 |
|
liver-LE-cornoil-19h rep2
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
|
liver, LE, COil, 19 hours
|
Sample_geo_accession | GSM265386
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265386/suppl/GSM265386.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265386/suppl/GSM265386.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265386/suppl/GSM265386.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265387 | GPL341 |
|
liver-LE-cornoil-19h rep3
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
|
liver, LE, COil, 19 hours
|
Sample_geo_accession | GSM265387
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265387/suppl/GSM265387.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265387/suppl/GSM265387.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265387/suppl/GSM265387.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265388 | GPL341 |
|
liver-LE-cornoil-19h rep4
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
|
liver, LE, COil, 19 hours
|
Sample_geo_accession | GSM265388
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265388/suppl/GSM265388.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265388/suppl/GSM265388.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265388/suppl/GSM265388.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265389 | GPL341 |
|
liver-HW-cornoil-19h rep2
|
liver, HW, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:HW,Treatment:COil,Time:Hour19
|
liver, HW, COil, 19 hours
|
Sample_geo_accession | GSM265389
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265389/suppl/GSM265389.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265389/suppl/GSM265389.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265389/suppl/GSM265389.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265390 | GPL341 |
|
liver-HW-cornoil-19h rep3
|
liver, HW, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:HW,Treatment:COil,Time:Hour19
|
liver, HW, COil, 19 hours
|
Sample_geo_accession | GSM265390
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265390/suppl/GSM265390.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265390/suppl/GSM265390.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265390/suppl/GSM265390.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265391 | GPL341 |
|
liver-HW-cornoil-19h rep4
|
liver, HW, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:HW,Treatment:COil,Time:Hour19
|
liver, HW, COil, 19 hours
|
Sample_geo_accession | GSM265391
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265391/suppl/GSM265391.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265391/suppl/GSM265391.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265391/suppl/GSM265391.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265392 | GPL341 |
|
liver-LnA-cornoil-19h rep1
|
liver, LnA, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LnA,Treatment:COil,Time:Hour19
|
liver, LnA, COil, 19 hours
|
Sample_geo_accession | GSM265392
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Sep 08 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265392/suppl/GSM265392.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265392/suppl/GSM265392.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265392/suppl/GSM265392.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265393 | GPL341 |
|
liver-LnA-cornoil-19h rep2
|
liver, LnA, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LnA,Treatment:COil,Time:Hour19
|
liver, LnA, COil, 19 hours
|
Sample_geo_accession | GSM265393
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265393/suppl/GSM265393.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265393/suppl/GSM265393.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265393/suppl/GSM265393.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265394 | GPL341 |
|
liver-LnA-cornoil-19h rep3
|
liver, LnA, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LnA,Treatment:COil,Time:Hour19
|
liver, LnA, COil, 19 hours
|
Sample_geo_accession | GSM265394
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265394/suppl/GSM265394.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265394/suppl/GSM265394.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265394/suppl/GSM265394.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265395 | GPL341 |
|
liver-LnA-cornoil-19h rep4
|
liver, LnA, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LnA,Treatment:COil,Time:Hour19
|
liver, LnA, COil, 19 hours
|
Sample_geo_accession | GSM265395
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265395/suppl/GSM265395.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265395/suppl/GSM265395.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265395/suppl/GSM265395.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265396 | GPL341 |
|
liver-LnC-cornoil-19h rep1
|
liver, LnC, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LnC,Treatment:COil,Time:Hour19
|
liver, LnC, COil, 19 hours
|
Sample_geo_accession | GSM265396
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265396/suppl/GSM265396.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265396/suppl/GSM265396.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265396/suppl/GSM265396.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265397 | GPL341 |
|
liver-LnC-cornoil-19h rep2
|
liver, LnC, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LnC,Treatment:COil,Time:Hour19
|
liver, LnC, COil, 19 hours
|
Sample_geo_accession | GSM265397
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265397/suppl/GSM265397.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265397/suppl/GSM265397.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265397/suppl/GSM265397.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
|
GSM265398 | GPL341 |
|
liver-LnC-cornoil-19h rep3
|
liver, LnC, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LnC,Treatment:COil,Time:Hour19
|
liver, LnC, COil, 19 hours
|
Sample_geo_accession | GSM265398
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265398/suppl/GSM265398.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265398/suppl/GSM265398.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265398/suppl/GSM265398.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
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GSM265399 | GPL341 |
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liver-LnC-cornoil-19h rep4
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liver, LnC, COil, 19 hours
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Age:10-12 weeks,Gender:Male,Strain:LnC,Treatment:COil,Time:Hour19
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liver, LnC, COil, 19 hours
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Sample_geo_accession | GSM265399
| Sample_status | Public on Nov 24 2009
| Sample_submission_date | Feb 12 2008
| Sample_last_update_date | Apr 21 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with corn oil vehicle for 19 hours.
| Sample_growth_protocol_ch1 | Three rat strains/lines harbouring wildtype AHR were selected: Sprague-Dawley (SD), Long-Evans (LE), and Line-C (LnC). Two rat strains/lines harbouring mutant AHR were selected: Han/Wistar(Kuopio) (HW) and Line-A (LnA). Four animals of each strain were obtained from the breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland; they were fed and housed under identical conditions in this facility. All animals were males 10-12 weeks old.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Manufacturer's protocol
| Sample_hyb_protocol | Manufacturer's protocol
| Sample_scan_protocol | Manufacturer's protocol
| Sample_data_processing | Array data were loaded into the R statistical environment (v2.6.1) using the affy package (v1.12.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.10.0, (Irizarry et al., 2003)).
| Sample_platform_id | GPL341
| Sample_contact_name | Paul,C,Boutros
| Sample_contact_email | Paul.Boutros@utoronto.ca
| Sample_contact_institute | Ontario Institute for Cancer Research
| Sample_contact_address | 101 College Street, Suite 800
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G 0A3
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265399/suppl/GSM265399.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265399/suppl/GSM265399.DAT.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM265nnn/GSM265399/suppl/GSM265399.EXP.gz
| Sample_series_id | GSE10448
| Sample_data_row_count | 15923
| |
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