Search results for the GEO ID: GSE10592 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM267014 | GPL570 |
|
HBE_PBS24_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267014
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal PBS for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267014/suppl/GSM267014.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267015 | GPL570 |
|
HBE_PBS24_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267015
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal PBS for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267015/suppl/GSM267015.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267016 | GPL570 |
|
HBE_PBS24_code3
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267016
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal PBS for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267016/suppl/GSM267016.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267017 | GPL570 |
|
HBE_PBS24_code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267017
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal PBS for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267017/suppl/GSM267017.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267018 | GPL570 |
|
HBE_PBS6_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267018
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal PBS for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267018/suppl/GSM267018.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267019 | GPL570 |
|
HBE_PBS6_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267019
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal PBS for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267019/suppl/GSM267019.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267020 | GPL570 |
|
HBE_PBS6_code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267020
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal PBS for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267020/suppl/GSM267020.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267021 | GPL570 |
|
HBE_SMM24_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267021
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal SMM for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267021/suppl/GSM267021.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267022 | GPL570 |
|
HBE_SMM24_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267022
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal SMM for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267022/suppl/GSM267022.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267023 | GPL570 |
|
HBE_SMM24_code3
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267023
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal SMM for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267023/suppl/GSM267023.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267024 | GPL570 |
|
HBE_SMM6_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267024
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal SMM for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267024/suppl/GSM267024.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267025 | GPL570 |
|
HBE_SMM6_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267025
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal SMM for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267025/suppl/GSM267025.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267026 | GPL570 |
|
HBE_SMM6_code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267026
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mul mucosal SMM for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267026/suppl/GSM267026.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267027 | GPL570 |
|
HBE_AZIT24_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267027
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267027/suppl/GSM267027.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267028 | GPL570 |
|
HBE_AZIT24_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267028
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267028/suppl/GSM267028.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267029 | GPL570 |
|
HBE_AZIT24_code3
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267029
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267029/suppl/GSM267029.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267030 | GPL570 |
|
HBE_AZIT24_code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267030
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 24 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267030/suppl/GSM267030.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267031 | GPL570 |
|
HBE_AZIT48_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267031
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267031/suppl/GSM267031.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267032 | GPL570 |
|
HBE_AZIT48_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267032
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267032/suppl/GSM267032.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267033 | GPL570 |
|
HBE_AZIT48_code3
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267033
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267033/suppl/GSM267033.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267034 | GPL570 |
|
HBE_AZIT48_code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267034
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267034/suppl/GSM267034.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267035 | GPL570 |
|
HBE_AZIT48SMM6-code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267035
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours + 30mul mucosal SMM during last 6 hrs before harvested. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267035/suppl/GSM267035.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267036 | GPL570 |
|
HBE_AZIT48SMM6-code3
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267036
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours + 30mul mucosal SMM during last 6 hrs before harvested. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267036/suppl/GSM267036.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267037 | GPL570 |
|
HBE_AZIT48SMM6-code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267037
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours + 30mul mucosal SMM during last 6 hrs before harvested. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267037/suppl/GSM267037.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267038 | GPL570 |
|
HBE_AZIT6_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267038
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267038/suppl/GSM267038.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267039 | GPL570 |
|
HBE_AZIT6_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267039
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267039/suppl/GSM267039.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267040 | GPL570 |
|
HBE_AZIT6_code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267040
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 6 hours. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267040/suppl/GSM267040.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267041 | GPL570 |
|
HBE_AZIT72SMM24-code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267041
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 72 hours + 30mul mucosal SMM during last 24 hrs before harvested. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267041/suppl/GSM267041.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267042 | GPL570 |
|
HBE_AZIT72SMM24-code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267042
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 72 hours + 30mul mucosal SMM during last 24 hrs before harvested. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267042/suppl/GSM267042.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267043 | GPL570 |
|
HBE_AZIT72SMM24-code3
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267043
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 72 hours + 30mul mucosal SMM during last 24 hrs before harvested. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267043/suppl/GSM267043.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267044 | GPL570 |
|
HBE_AZIT72SMM24-code4
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267044
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to 30mug/ml serosal Azithromycin for 48 hours + 30mul mucosal SMM during last 24 hrs before harvested. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267044/suppl/GSM267044.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267045 | GPL570 |
|
HBE_t0_code1
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267045
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to nothing. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267045/suppl/GSM267045.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267046 | GPL570 |
|
HBE_t0_code2
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267046
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to nothing. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267046/suppl/GSM267046.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
| |
|
GSM267047 | GPL570 |
|
HBE_t0_code3
|
well-differentiated primary airway bronchial culture
|
Genotype:normal
|
Gene expression data from human airway epithelium treated as described.
|
Sample_geo_accession | GSM267047
| Sample_status | Public on May 19 2009
| Sample_submission_date | Feb 20 2008
| Sample_last_update_date | Feb 11 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Well-differentiated human airway epithelium grown at air-liquid interface exposed to nothing. Samples were placed in RNAlater until RNA harvest.
| Sample_growth_protocol_ch1 | Human bronchial epithelium harvested from normal lung donors. primary cells are placed on T-col membranes approximately 30 days until well-differentiated. Cells are grown at air-liquid interface which is established in 10-14 days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNAzol followed by Qiagen RNeasy columns with DNAase treatment according to publisher and manufacturers protocols.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 7 mug total RNA (Expression analysis technical manual, Affymetrix).
| Sample_hyb_protocol | 15 mug of fragmented cRNA were hybridized for 16 hrs on Genechip Fluidics Station using Affymetrix HU133 plus 2.0 arrays (GPL570).
| Sample_scan_protocol | Genechips were scanned using Hewlett-packard GeneArray scanner.
| Sample_data_processing | Expressions were computed using the Bioconductor GCRMA package with default parameters.
| Sample_platform_id | GPL570
| Sample_contact_name | Wanda,K.,O'Neal
| Sample_contact_email | woneal@med.unc.edu
| Sample_contact_phone | 919-962-9866
| Sample_contact_department | Cystic Fibrosis/Pulmonary Research and Treatment Center
| Sample_contact_institute | University of North Carolina at Chapel Hill
| Sample_contact_address | CB # 7248
| Sample_contact_city | Chapel Hill
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27599
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM267nnn/GSM267047/suppl/GSM267047.CEL.gz
| Sample_series_id | GSE10592
| Sample_data_row_count | 54675
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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