Search results for the GEO ID: GSE10641 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM268209 | GPL1355 |
|
F344 rat 6h Control, biological rep1
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268209
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268209/suppl/GSM268209.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268210 | GPL1355 |
|
F344 rat 6h Control, biological rep2
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268210
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268210/suppl/GSM268210.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268211 | GPL1355 |
|
F344 rat 6h Control, biological rep3
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268211
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268211/suppl/GSM268211.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268212 | GPL1355 |
|
F344 rat 6h NMU Treatment, biological rep1
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268212
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268212/suppl/GSM268212.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268213 | GPL1355 |
|
F344 rat 6h NMU Treatment, biological rep2
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268213
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268213/suppl/GSM268213.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268214 | GPL1355 |
|
F344 rat 6h NMU Treatment, biological rep3
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268214
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268214/suppl/GSM268214.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268215 | GPL1355 |
|
Cop rat 6h Control, biological rep1
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268215
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268215/suppl/GSM268215.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268216 | GPL1355 |
|
Cop rat 6h Control, biological rep2
|
FCop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268216
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268216/suppl/GSM268216.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268217 | GPL1355 |
|
Cop rat 6h Control, biological rep3
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268217
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268217/suppl/GSM268217.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268218 | GPL1355 |
|
Cop rat 6h NMU Treatment, biological rep1
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268218
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268218/suppl/GSM268218.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268219 | GPL1355 |
|
Cop rat 6h NMU Treatment, biological rep2
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268219
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268219/suppl/GSM268219.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268220 | GPL1355 |
|
Cop rat 6h NMU Treatment, biological rep3
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 6 hour post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268220
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268220/suppl/GSM268220.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268221 | GPL1355 |
|
F344 rat 1d Control, biological rep1
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1day post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268221
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268221/suppl/GSM268221.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268222 | GPL1355 |
|
F344 rat 1d Control, biological rep2
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1day post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268222
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268222/suppl/GSM268222.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268223 | GPL1355 |
|
F344 rat 1d Control, biological rep3
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268223
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268223/suppl/GSM268223.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268224 | GPL1355 |
|
F344 rat 1d NMU Treatment, biological rep1
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268224
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268224/suppl/GSM268224.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268225 | GPL1355 |
|
F344 rat 1d NMU Treatment, biological rep2
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268225
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268225/suppl/GSM268225.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268226 | GPL1355 |
|
F344 rat 1d NMU Treatment, biological rep3
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268226
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268226/suppl/GSM268226.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268227 | GPL1355 |
|
Cop rat 1d Control, biological rep1
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268227
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268227/suppl/GSM268227.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268228 | GPL1355 |
|
Cop rat 1d Control, biological rep2
|
FCop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268228
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268228/suppl/GSM268228.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268229 | GPL1355 |
|
Cop rat 1d Control, biological rep3
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268229
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268229/suppl/GSM268229.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268230 | GPL1355 |
|
Cop rat 1d NMU Treatment, biological rep1
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268230
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268230/suppl/GSM268230.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268231 | GPL1355 |
|
Cop rat 1d NMU Treatment, biological rep2
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268231
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268231/suppl/GSM268231.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268232 | GPL1355 |
|
Cop rat 1d NMU Treatment, biological rep3
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 1 day post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268232
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268232/suppl/GSM268232.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268233 | GPL1355 |
|
F344 rat 30d Control, biological rep1
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 days post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268233
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268233/suppl/GSM268233.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268234 | GPL1355 |
|
F344 rat 30d Control, biological rep2
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 days post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268234
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268234/suppl/GSM268234.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268235 | GPL1355 |
|
F344 rat 30d Control, biological rep3
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 days post Saline vehical treated 55 days old F344 rats
|
Sample_geo_accession | GSM268235
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268235/suppl/GSM268235.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268236 | GPL1355 |
|
F344 rat 30d NMU Treatment, biological rep1
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 days post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268236
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268236/suppl/GSM268236.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268237 | GPL1355 |
|
F344 rat 30d NMU Treatment, biological rep2
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 days post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268237
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268237/suppl/GSM268237.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268238 | GPL1355 |
|
F344 rat 30d NMU Treatment, biological rep3
|
F344 rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 days post NMU treated 55 days old F344 rats
|
Sample_geo_accession | GSM268238
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268238/suppl/GSM268238.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268239 | GPL1355 |
|
Cop rat 30d Control, biological rep1
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 days post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268239
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268239/suppl/GSM268239.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268240 | GPL1355 |
|
Cop rat 30d Control, biological rep2
|
FCop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 day post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268240
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268240/suppl/GSM268240.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268241 | GPL1355 |
|
Cop rat 30d Control, biological rep3
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 day post Saline vehical treated 55 days old Cop rats
|
Sample_geo_accession | GSM268241
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268241/suppl/GSM268241.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268242 | GPL1355 |
|
Cop rat 30d NMU Treatment, biological rep1
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 day post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268242
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268242/suppl/GSM268242.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268243 | GPL1355 |
|
Cop rat 30d NMU Treatment, biological rep2
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 day post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268243
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268243/suppl/GSM268243.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
GSM268244 | GPL1355 |
|
Cop rat 30d NMU Treatment, biological rep3
|
Cop rat 55 days
|
Puberty Rat Mammary gland
|
Mammary gland collected at 30 day post NMU treated 55 days old Cop rats
|
Sample_geo_accession | GSM268244
| Sample_status | Public on Feb 27 2008
| Sample_submission_date | Feb 26 2008
| Sample_last_update_date | Feb 26 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNAEasy Maxi kit with Modified Protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, the cRNA were hybridized on Affymetrix Genechips Rat Genome 230 2.0 arrays according to to the GeneChip Expression Analysis Manual
| Sample_scan_protocol | GeneChips were scanned using GeneChip« Scanner 3000 with AutoLoader
| Sample_data_processing | The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling.
| Sample_platform_id | GPL1355
| Sample_contact_name | Xuefeng,,Ren
| Sample_contact_email | xfr@u.washington.edu
| Sample_contact_phone | 510-642-8965
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address |
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM268nnn/GSM268244/suppl/GSM268244.CEL.gz
| Sample_series_id | GSE10641
| Sample_data_row_count | 31099
| |
|
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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