Search results for the GEO ID: GSE10727  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM271067 | GPL1261 |
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Control dermis, sample 1
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Mouse control E15.5 dermis
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E15.5 dermis
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Gene expression data from control E15.5 embryo dermis
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| Sample_geo_accession | GSM271067
| | Sample_status | Public on May 20 2008
| | Sample_submission_date | Mar 05 2008
| | Sample_last_update_date | May 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Dissected E15.5 dorsal embryonic skin was dispase treated to separate epidermis and dermis. RNA was isolated from dermis using RNAeasy minikit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to 1 cycle of amplification/biotin labeling using the GeneCHIP IVT Affymetrix labeling kit, according to the manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was performed according to the standard Affymetrix protocol using GeneCHIP hybridization and wash buffer FS450 according to the manufacturer's instructions.
| | Sample_scan_protocol | Data were scanned using an Affymetrix scanner
| | Sample_data_processing | Scanned microarray images were imported into Gene Chip Operating Software (GCOS, Affymetrix, Santa Clara, CA) to generate signal values and prenet/absent calls for each probe set using the MAS 5.0 statistical expression algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,E,Millar
| | Sample_contact_email | millars@mail.med.upenn.edu
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | M8D Stellar-Chance Labs, 422 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271067/suppl/GSM271067.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271067/suppl/GSM271067.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271067/suppl/GSM271067.EXP.gz
| | Sample_series_id | GSE10727
| | Sample_series_id | GSE10733
| | Sample_data_row_count | 45101
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GSM271068 | GPL1261 |
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Control dermis, sample 2
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Mouse control E15.5 dermis
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E15.5 dermis
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Gene expression data from control E15.5 embryo dermis
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| Sample_geo_accession | GSM271068
| | Sample_status | Public on May 20 2008
| | Sample_submission_date | Mar 05 2008
| | Sample_last_update_date | May 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Dissected E15.5 dorsal embryonic skin was dispase treated to separate epidermis and dermis. RNA was isolated from dermis using RNAeasy minikit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to 1 cycle of amplification/biotin labeling using the GeneCHIP IVT Affymetrix labeling kit, according to the manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was performed according to the standard Affymetrix protocol using GeneCHIP hybridization and wash buffer FS450 according to the manufacturer's instructions.
| | Sample_scan_protocol | Data were scanned using an Affymetrix scanner
| | Sample_data_processing | Scanned microarray images were imported into Gene Chip Operating Software (GCOS, Affymetrix, Santa Clara, CA) to generate signal values and prenet/absent calls for each probe set using the MAS 5.0 statistical expression algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,E,Millar
| | Sample_contact_email | millars@mail.med.upenn.edu
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | M8D Stellar-Chance Labs, 422 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271068/suppl/GSM271068.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271068/suppl/GSM271068.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271068/suppl/GSM271068.EXP.gz
| | Sample_series_id | GSE10727
| | Sample_series_id | GSE10733
| | Sample_data_row_count | 45101
| | |
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GSM271069 | GPL1261 |
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Mutant dermis, sample 1
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Mouse activated beta-catenin E15.5 dermis
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E15.5 dermis
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Gene expression data from activated beta-catenin mutant E15.5 embryo dermis
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| Sample_geo_accession | GSM271069
| | Sample_status | Public on May 20 2008
| | Sample_submission_date | Mar 05 2008
| | Sample_last_update_date | May 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Dissected E15.5 dorsal embryonic skin was dispase treated to separate epidermis and dermis. RNA was isolated from dermis using RNAeasy minikit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to 1 cycle of amplification/biotin labeling using the GeneCHIP IVT Affymetrix labeling kit, according to the manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was performed according to the standard Affymetrix protocol using GeneCHIP hybridization and wash buffer FS450 according to the manufacturer's instructions.
| | Sample_scan_protocol | Data were scanned using an Affymetrix scanner
| | Sample_data_processing | Scanned microarray images were imported into Gene Chip Operating Software (GCOS, Affymetrix, Santa Clara, CA) to generate signal values and prenet/absent calls for each probe set using the MAS 5.0 statistical expression algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,E,Millar
| | Sample_contact_email | millars@mail.med.upenn.edu
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | M8D Stellar-Chance Labs, 422 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271069/suppl/GSM271069.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271069/suppl/GSM271069.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271069/suppl/GSM271069.EXP.gz
| | Sample_series_id | GSE10727
| | Sample_series_id | GSE10733
| | Sample_data_row_count | 45101
| | |
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GSM271070 | GPL1261 |
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Mutant dermis, sample 2
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Mouse activated beta-catenin E15.5 dermis
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E15.5 dermis
|
Gene expression data from activated beta-catenin mutant E15.5 embryo dermis
|
| Sample_geo_accession | GSM271070
| | Sample_status | Public on May 20 2008
| | Sample_submission_date | Mar 05 2008
| | Sample_last_update_date | May 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Dissected E15.5 dorsal embryonic skin was dispase treated to separate epidermis and dermis. RNA was isolated from dermis using RNAeasy minikit (Qiagen) following the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was subjected to 1 cycle of amplification/biotin labeling using the GeneCHIP IVT Affymetrix labeling kit, according to the manufacturer's instructions.
| | Sample_hyb_protocol | Hybridization was performed according to the standard Affymetrix protocol using GeneCHIP hybridization and wash buffer FS450 according to the manufacturer's instructions.
| | Sample_scan_protocol | Data were scanned using an Affymetrix scanner
| | Sample_data_processing | Scanned microarray images were imported into Gene Chip Operating Software (GCOS, Affymetrix, Santa Clara, CA) to generate signal values and prenet/absent calls for each probe set using the MAS 5.0 statistical expression algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,E,Millar
| | Sample_contact_email | millars@mail.med.upenn.edu
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | M8D Stellar-Chance Labs, 422 Curie Boulevard
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271070/suppl/GSM271070.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271070/suppl/GSM271070.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271070/suppl/GSM271070.EXP.gz
| | Sample_series_id | GSE10727
| | Sample_series_id | GSE10733
| | Sample_data_row_count | 45101
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