Search results for the GEO ID: GSE10737 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM254985 | GPL570 |
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Jurkat cyclin T1 knockdown Mock treated 2
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Jurkat cell line
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Lymphocyte cell line.
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All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8502.
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Sample_geo_accession | GSM254985
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 07 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with shRNA against cyclin T1 and then mock treated.
| Sample_growth_protocol_ch1 | Jurkat cells were a gift were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM254nnn/GSM254985/suppl/GSM254985.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM254nnn/GSM254985/suppl/GSM254985.CHP.gz
| Sample_series_id | GSE10737
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
| |
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GSM257468 | GPL570 |
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Jurkat cyclin T1 knockdown Mock treated 1
|
Jurkat cell line
|
Lymphocyte cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8151.
|
Sample_geo_accession | GSM257468
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 16 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with shRNA against cyclin T1 and then mock treated.
| Sample_growth_protocol_ch1 | Jurkat cells were Cells were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257468/suppl/GSM257468.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257468/suppl/GSM257468.CHP.gz
| Sample_series_id | GSE10737
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
| |
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GSM257469 | GPL570 |
|
Jurkat control shRNA Mock treated 1
|
Jurkat cell line
|
Lymphocyte cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8153.
|
Sample_geo_accession | GSM257469
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 16 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with a control shRNA and then mock treated.
| Sample_growth_protocol_ch1 | Jurkat cells were amaintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257469/suppl/GSM257469.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257469/suppl/GSM257469.CHP.gz
| Sample_series_id | GSE10737
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
| |
|
GSM257470 | GPL570 |
|
Jurkat control shRNA Mock treated 2
|
Jurkat cell line
|
Lymphocyte cell line.
|
All the above steps after RNA extraction were done by the Microarray Core Facility at Baylor College of Medicine. This sample is numbered as 8504.
|
Sample_geo_accession | GSM257470
| Sample_status | Public on Jul 31 2008
| Sample_submission_date | Jan 16 2008
| Sample_last_update_date | May 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Jurkat cells were transduced with a control shRNA and mock treated.
| Sample_growth_protocol_ch1 | Jurkat cells were were maintained in RPMI 1640 medium (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Hyclone).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated using the Qiagen RNeasy kit according to the manufacturer's protocol and RNA quality was determined using an Agilent 2100 Bioanalyzer.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | See affymetrix protocol.
| Sample_hyb_protocol | See affymetrix protocol.
| Sample_scan_protocol | Affymetrix Gene Chip Scanner 3100.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Andrew ,P.,Rice
| Sample_contact_laboratory | Rice
| Sample_contact_department | Molecular Virology and Microbiology
| Sample_contact_institute | Baylor College of Medicine
| Sample_contact_address | One Baylor Plaza
| Sample_contact_city | Houston
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 77025
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257470/suppl/GSM257470.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM257nnn/GSM257470/suppl/GSM257470.CHP.gz
| Sample_series_id | GSE10737
| Sample_series_id | GSE11462
| Sample_data_row_count | 54675
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