Search results for the GEO ID: GSE10740 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM271147 | GPL1261 |
|
NHE3+/+ replicate 1
|
colon
|
Genotype: wild-type
Age: 6-8 weeks
|
Gene expression data from the colon of wild-type mice
whole colonic tissue was dissected from mice 6-8 weeks of age
|
Sample_geo_accession | GSM271147
| Sample_status | Public on Mar 06 2008
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Mar 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 701021 Rev. 5, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to GeneChip® Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were initially analyzed with Afymetrix GCOS software using Affymetrix default analysis settings and global scaling as normalization method. Subsequently, data were imported to GeneSpring v.7.3.1 (Agilent).
| Sample_platform_id | GPL1261
| Sample_contact_name | Pawel,R.,Kiela
| Sample_contact_email | pkiela@peds.arizona.edu
| Sample_contact_phone | 520-626-5645
| Sample_contact_fax | 520-626-4141
| Sample_contact_laboratory | Section of Gastroenterology and Nutrition
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Arizona
| Sample_contact_address | 1501 N. Campbell Ave.
| Sample_contact_city | Tucson
| Sample_contact_state | AZ
| Sample_contact_zip/postal_code | 85724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271147/suppl/GSM271147.CEL.gz
| Sample_series_id | GSE10740
| Sample_data_row_count | 45101
| |
|
GSM271148 | GPL1261 |
|
NHE3+/+ replicate 2
|
colon
|
Genotype: wild-type
Age: 6-8 weeks
|
Gene expression data from the colon of wild-type mice
whole colonic tissue was dissected from mice 6-8 weeks of age
|
Sample_geo_accession | GSM271148
| Sample_status | Public on Mar 06 2008
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Mar 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 701021 Rev. 5, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to GeneChip® Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were initially analyzed with Afymetrix GCOS software using Affymetrix default analysis settings and global scaling as normalization method. Subsequently, data were imported to GeneSpring v.7.3.1 (Agilent).
| Sample_platform_id | GPL1261
| Sample_contact_name | Pawel,R.,Kiela
| Sample_contact_email | pkiela@peds.arizona.edu
| Sample_contact_phone | 520-626-5645
| Sample_contact_fax | 520-626-4141
| Sample_contact_laboratory | Section of Gastroenterology and Nutrition
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Arizona
| Sample_contact_address | 1501 N. Campbell Ave.
| Sample_contact_city | Tucson
| Sample_contact_state | AZ
| Sample_contact_zip/postal_code | 85724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271148/suppl/GSM271148.CEL.gz
| Sample_series_id | GSE10740
| Sample_data_row_count | 45101
| |
|
GSM271149 | GPL1261 |
|
NHE3+/+ replicate 3
|
colon
|
Genotype: wild-type
Age: 6-8 weeks
|
Gene expression data from the colon of wild-type mice
whole colonic tissue was dissected from mice 6-8 weeks of age
|
Sample_geo_accession | GSM271149
| Sample_status | Public on Mar 06 2008
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Mar 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 701021 Rev. 5, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to GeneChip® Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were initially analyzed with Afymetrix GCOS software using Affymetrix default analysis settings and global scaling as normalization method. Subsequently, data were imported to GeneSpring v.7.3.1 (Agilent).
| Sample_platform_id | GPL1261
| Sample_contact_name | Pawel,R.,Kiela
| Sample_contact_email | pkiela@peds.arizona.edu
| Sample_contact_phone | 520-626-5645
| Sample_contact_fax | 520-626-4141
| Sample_contact_laboratory | Section of Gastroenterology and Nutrition
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Arizona
| Sample_contact_address | 1501 N. Campbell Ave.
| Sample_contact_city | Tucson
| Sample_contact_state | AZ
| Sample_contact_zip/postal_code | 85724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271149/suppl/GSM271149.CEL.gz
| Sample_series_id | GSE10740
| Sample_data_row_count | 45101
| |
|
GSM271150 | GPL1261 |
|
NHE3-/- replicate 1
|
colon
|
Genotype: NHE3-/-
Age: 6-8 weeks
|
Gene expression data from the colon of NHE3-deficient mice
whole colonic tissue was dissected from mice 6-8 weeks of age
|
Sample_geo_accession | GSM271150
| Sample_status | Public on Mar 06 2008
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Mar 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 701021 Rev. 5, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to GeneChip® Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were initially analyzed with Afymetrix GCOS software using Affymetrix default analysis settings and global scaling as normalization method. Subsequently, data were imported to GeneSpring v.7.3.1 (Agilent).
| Sample_platform_id | GPL1261
| Sample_contact_name | Pawel,R.,Kiela
| Sample_contact_email | pkiela@peds.arizona.edu
| Sample_contact_phone | 520-626-5645
| Sample_contact_fax | 520-626-4141
| Sample_contact_laboratory | Section of Gastroenterology and Nutrition
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Arizona
| Sample_contact_address | 1501 N. Campbell Ave.
| Sample_contact_city | Tucson
| Sample_contact_state | AZ
| Sample_contact_zip/postal_code | 85724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271150/suppl/GSM271150.CEL.gz
| Sample_series_id | GSE10740
| Sample_data_row_count | 45101
| |
|
GSM271151 | GPL1261 |
|
NHE3-/- replicate 2
|
colon
|
Genotype: NHE3-/-
Age: 6-8 weeks
|
Gene expression data from the colon of NHE3-deficient mice
whole colonic tissue was dissected from mice 6-8 weeks of age
|
Sample_geo_accession | GSM271151
| Sample_status | Public on Mar 06 2008
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Mar 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 701021 Rev. 5, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to GeneChip® Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were initially analyzed with Afymetrix GCOS software using Affymetrix default analysis settings and global scaling as normalization method. Subsequently, data were imported to GeneSpring v.7.3.1 (Agilent).
| Sample_platform_id | GPL1261
| Sample_contact_name | Pawel,R.,Kiela
| Sample_contact_email | pkiela@peds.arizona.edu
| Sample_contact_phone | 520-626-5645
| Sample_contact_fax | 520-626-4141
| Sample_contact_laboratory | Section of Gastroenterology and Nutrition
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Arizona
| Sample_contact_address | 1501 N. Campbell Ave.
| Sample_contact_city | Tucson
| Sample_contact_state | AZ
| Sample_contact_zip/postal_code | 85724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271151/suppl/GSM271151.CEL.gz
| Sample_series_id | GSE10740
| Sample_data_row_count | 45101
| |
|
GSM271152 | GPL1261 |
|
NHE3-/- replicate 3
|
colon
|
Genotype: NHE3-/-
Age: 6-8 weeks
|
Gene expression data from the colon of NHE3-deficient mice
whole colonic tissue was dissected from mice 6-8 weeks of age
|
Sample_geo_accession | GSM271152
| Sample_status | Public on Mar 06 2008
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Mar 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | N/A
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 701021 Rev. 5, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to GeneChip® Mouse Genome 430 2.0 Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were initially analyzed with Afymetrix GCOS software using Affymetrix default analysis settings and global scaling as normalization method. Subsequently, data were imported to GeneSpring v.7.3.1 (Agilent).
| Sample_platform_id | GPL1261
| Sample_contact_name | Pawel,R.,Kiela
| Sample_contact_email | pkiela@peds.arizona.edu
| Sample_contact_phone | 520-626-5645
| Sample_contact_fax | 520-626-4141
| Sample_contact_laboratory | Section of Gastroenterology and Nutrition
| Sample_contact_department | Pediatrics
| Sample_contact_institute | University of Arizona
| Sample_contact_address | 1501 N. Campbell Ave.
| Sample_contact_city | Tucson
| Sample_contact_state | AZ
| Sample_contact_zip/postal_code | 85724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271152/suppl/GSM271152.CEL.gz
| Sample_series_id | GSE10740
| Sample_data_row_count | 45101
| |
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