Search results for the GEO ID: GSE10741 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM271153 | GPL1261 |
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BMDC control cells
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Bone marrow-derived dendritic cells, not 1D8 treated
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C57BL/6 mice, Gender: Male, Age: 6~8 weeks.
BMDCs were prepared from bone marrow cells collected by removing the femur bones, cutting off each end and flushing out the bone marrow with RPMI 1640 medium using a syringe. The pooled cells were harvested by centrifugation at 600 g, 10 min and resuspended in 2 ml ACK buffer for 5 min at room temperature to lyse the red blood cells. These cells were washed in RPMI-1640 medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin and the Dendritic Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days.
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Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
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Sample_geo_accession | GSM271153
| Sample_status | Public on Feb 23 2009
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | B&K Universal
| Sample_treatment_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days. BMDCs were sorted by staining with FITC labeled anti-CD80 antibody and flow cytometry.
| Sample_growth_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from DCs using TRIzol Reagent (Invitrogen) followed by RNA clean up with RNeasy Mini kit (QIAGEN).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Rongcun,,Yang
| Sample_contact_laboratory | Rongcun Yang MD, PhD
| Sample_contact_department | Department of Immunology
| Sample_contact_institute | Nankai University School of Medicine
| Sample_contact_address | Nankai District, 94 Weijin Lu
| Sample_contact_city | Tianjin
| Sample_contact_zip/postal_code | 300071
| Sample_contact_country | China
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271153/suppl/GSM271153.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE10741
| Sample_data_row_count | 45101
| |
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GSM271154 | GPL1261 |
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BMDCs cocultured with irradiated tumor
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Bone marrow-derived dendritic cells, irradiated 1D8 treated
|
C57BL/6 mice, Gender: Male, Age: 6~8 weeks.
BMDCs were prepared from bone marrow cells collected by removing the femur bones, cutting off each end and flushing out the bone marrow with RPMI 1640 medium using a syringe. The pooled cells were harvested by centrifugation at 600 g, 10 min and resuspended in 2 ml ACK buffer for 5 min at room temperature to lyse the red blood cells. These cells were washed in RPMI-1640 medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin and the Dendritic Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days. They were cocultured with irradiated (50Gy) 1D8 mouse ovarian surface epithelial tumor cells at a ratio 1:5, tumor:BMDC
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM271154
| Sample_status | Public on Feb 23 2009
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | Mice: B&K Universal, 1D8 cells: Katherine F Roby
| Sample_treatment_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days. BMDCs were cocultured with irradiated (50Gy) 1D8 tumor cells and then sorted by staining with FITC labeled anti-CD80 antibody and flow cytometry.
| Sample_growth_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from DCs using TRIzol Reagent (Invitrogen) followed by RNA clean up with RNeasy Mini kit (QIAGEN).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Rongcun,,Yang
| Sample_contact_laboratory | Rongcun Yang MD, PhD
| Sample_contact_department | Department of Immunology
| Sample_contact_institute | Nankai University School of Medicine
| Sample_contact_address | Nankai District, 94 Weijin Lu
| Sample_contact_city | Tianjin
| Sample_contact_zip/postal_code | 300071
| Sample_contact_country | China
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271154/suppl/GSM271154.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE10741
| Sample_data_row_count | 45101
| |
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GSM271155 | GPL1261 |
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BDMCs cultured in tumor-conditioned medium
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Bone marrow-derived dendritic cells, 1D8 tumor cell supernatent treated
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C57BL/6 mice, Gender: Male, Age: 6~8 weeks.
BMDCs were prepared from bone marrow cells collected by removing the femur bones, cutting off each end and flushing out the bone marrow with RPMI 1640 medium using a syringe. The pooled cells were harvested by centrifugation at 600 g, 10 min and resuspended in 2 ml ACK buffer for 5 min at room temperature to lyse the red blood cells. These cells were washed in RPMI-1640 medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin and the Dendritic Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days. They were cocultured in 1D8 (mouse ovarian surface epithelial cell) tumor cell-conditioned medium at 25% (v/v).
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM271155
| Sample_status | Public on Feb 23 2009
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | Mice: B&K Universal, 1D8 cells: Katherine F Roby
| Sample_treatment_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days. BMDCs were cocultured in 1D8 tumor cell-conditioned medium and sorted by staining with FITC labeled anti-CD80 antibody and flow cytometry.
| Sample_growth_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from DCs using TRIzol Reagent (Invitrogen) followed by RNA clean up with RNeasy Mini kit (QIAGEN).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Rongcun,,Yang
| Sample_contact_laboratory | Rongcun Yang MD, PhD
| Sample_contact_department | Department of Immunology
| Sample_contact_institute | Nankai University School of Medicine
| Sample_contact_address | Nankai District, 94 Weijin Lu
| Sample_contact_city | Tianjin
| Sample_contact_zip/postal_code | 300071
| Sample_contact_country | China
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271155/suppl/GSM271155.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE10741
| Sample_data_row_count | 45101
| |
|
GSM271156 | GPL1261 |
|
BMDCs cocultured with tumor
|
Bone marrow-derived dendritic cells, 1D8 treated
|
C57BL/6 mice, Gender: Male, Age: 6~8 weeks.
BMDCs were prepared from bone marrow cells collected by removing the femur bones, cutting off each end and flushing out the bone marrow with RPMI 1640 medium using a syringe. The pooled cells were harvested by centrifugation at 600 g, 10 min and resuspended in 2 ml ACK buffer for 5 min at room temperature to lyse the red blood cells. These cells were washed in RPMI-1640 medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin and the Dendritic Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days. They were cocultured with 1D8 mouse ovarian surface epithelial tumor cells at a ratio 1:5, tumor:BMDC
|
Hybridization was performed by the Johns Hopkins Medical Institutions Microarray Core Facility.
|
Sample_geo_accession | GSM271156
| Sample_status | Public on Feb 23 2009
| Sample_submission_date | Mar 05 2008
| Sample_last_update_date | Apr 10 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_biomaterial_provider_ch1 | Mice: B&K Universal, 1D8 cells: Katherine F Roby
| Sample_treatment_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days. BMDCs were cocultured with 1D8 tumor cells and then sorted by staining with FITC labeled anti-CD80 antibody and flow cytometry.
| Sample_growth_protocol_ch1 | Cells were cultured in medium containing 500 U/ml GM-CSF (R&D systems, MN, USA) for 7days.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated from DCs using TRIzol Reagent (Invitrogen) followed by RNA clean up with RNeasy Mini kit (QIAGEN).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | One round amplification protocol for total RNA following Affymetrix’ specifications using T7 promoter oligo dT primer for cDNA synthesis, and ENZO IVT kit (www.affymetrix.com, GeneChip Expression Analysis, Technical Manual, 2003).
| Sample_hyb_protocol | 16hrs at 45° C with rotation (60rpm) as described by Affymetrix in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_scan_protocol | Using Affymetrix’ GeneChip Scanner 3000 7G and default parameters described by the manufacturer in their GeneChip Expression Analysis Technical Manual, 2004.
| Sample_data_processing | Image analysis using GCOS 1.4, using MAS 5.0 algorithm and manufacturer’s specifications. Global scaling of images to a target intensity of 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | Rongcun,,Yang
| Sample_contact_laboratory | Rongcun Yang MD, PhD
| Sample_contact_department | Department of Immunology
| Sample_contact_institute | Nankai University School of Medicine
| Sample_contact_address | Nankai District, 94 Weijin Lu
| Sample_contact_city | Tianjin
| Sample_contact_zip/postal_code | 300071
| Sample_contact_country | China
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM271nnn/GSM271156/suppl/GSM271156.CEL.gz
| Sample_relation | Reanalyzed by: GSE45704
| Sample_series_id | GSE10741
| Sample_data_row_count | 45101
| |
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