Search results for the GEO ID: GSE10770  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM273072 | GPL341 |
|
liver-LE-TCDD-19h rep 1
|
liver, LE, TCDD, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:TCDD,Time:Hour19
|
liver, LE, TCDD, 19 hours
|
| Sample_geo_accession | GSM273072
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273072/suppl/GSM273072.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273072/suppl/GSM273072.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
GSM273073 | GPL341 |
|
liver-LE-cornoil-19h rep 1
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
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liver, LE, COil, 19 hours
|
| Sample_geo_accession | GSM273073
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273073/suppl/GSM273073.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273073/suppl/GSM273073.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
GSM273074 | GPL341 |
|
liver-LE-cornoil-19h rep 2
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
|
liver, LE, COil, 19 hours
|
| Sample_geo_accession | GSM273074
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273074/suppl/GSM273074.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273074/suppl/GSM273074.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
GSM273075 | GPL341 |
|
liver-LE-cornoil-19h rep 3
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
|
liver, LE, COil, 19 hours
|
| Sample_geo_accession | GSM273075
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273075/suppl/GSM273075.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273075/suppl/GSM273075.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
GSM273076 | GPL341 |
|
liver-LE-cornoil-19h rep 4
|
liver, LE, COil, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:COil,Time:Hour19
|
liver, LE, COil, 19 hours
|
| Sample_geo_accession | GSM273076
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273076/suppl/GSM273076.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273076/suppl/GSM273076.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
GSM273077 | GPL341 |
|
liver-LE-TCDD-19h rep 2
|
liver, LE, TCDD, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:TCDD,Time:Hour19
|
liver, LE, TCDD, 19 hours
|
| Sample_geo_accession | GSM273077
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273077/suppl/GSM273077.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273077/suppl/GSM273077.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
GSM273078 | GPL341 |
|
liver-LE-TCDD-19h rep 3
|
liver, LE, TCDD, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:TCDD,Time:Hour19
|
liver, LE, TCDD, 19 hours
|
| Sample_geo_accession | GSM273078
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273078/suppl/GSM273078.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273078/suppl/GSM273078.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
GSM273079 | GPL341 |
|
liver-LE-TCDD-19h rep 4
|
liver, LE, TCDD, 19 hours
|
Age:10-12 weeks,Gender:Male,Strain:LE,Treatment:TCDD,Time:Hour19
|
liver, LE, TCDD, 19 hours
|
| Sample_geo_accession | GSM273079
| | Sample_status | Public on Sep 19 2008
| | Sample_submission_date | Mar 13 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Liver was harvested between 8:30 and 11:00 from rats treated by gavage with a single 100 µg/kg dose of TCDD or with corn oil vehicle for 3 or 19 h.
| | Sample_growth_protocol_ch1 | Two dioxin-sensitive rat strains/lines, L-E and LnC (which express wildtype AHR), and two dioxin-resistant rat strains/lines, H/W and LnA, (that have a deletion in the AHR transactivation domain, (Pohjanvirta et al., 1998)) were from breeding colonies of the National Public Health Institute, Division of Environmental Health, Kuopio, Finland. All animals were males 10-12 weeks old.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer's instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyser (Agilent Technologies, Santa Clara, CA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Manufacturer's protocol
| | Sample_hyb_protocol | Manufacturer's protocol
| | Sample_scan_protocol | Manufacturer's protocol
| | Sample_data_processing | Array data were loaded into the R statistical environment (v2.3.1) using the affy package (v1.10.0) of the BioConductor open-source library (Gentleman et al., 2004). The array data were pre-processed with the GCRMA algorithm (v2.4.1, (Irizarry et al., 2003)).
| | Sample_platform_id | GPL341
| | Sample_contact_name | Paul,C,Boutros
| | Sample_contact_email | Paul.Boutros@utoronto.ca
| | Sample_contact_institute | Ontario Institute for Cancer Research
| | Sample_contact_address | 101 College Street, Suite 800
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5G 0A3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273079/suppl/GSM273079.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM273nnn/GSM273079/suppl/GSM273079.DAT.gz
| | Sample_series_id | GSE10770
| | Sample_data_row_count | 15923
| | |
|
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