Search results for the GEO ID: GSE10866  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM275468 | GPL339 |
|
Wild type mouse 15
|
Wild type mouse with no lesions
|
Wild type mouse with no lesions
|
Wild type mouse with no lesions
|
| Sample_geo_accession | GSM275468
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275468/suppl/GSM275468.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275468/suppl/GSM275468.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275469 | GPL339 |
|
Wild type mouse 30
|
Wild type mouse with no lesions
|
Wild type mouse with no lesions
|
Wild type mouse with no lesions
|
| Sample_geo_accession | GSM275469
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275469/suppl/GSM275469.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275469/suppl/GSM275469.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275470 | GPL339 |
|
Wild type mouse 42
|
Wild type mouse with no lesions
|
Wild type mouse with no lesions
|
Wild type mouse with no lesions
|
| Sample_geo_accession | GSM275470
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275470/suppl/GSM275470.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275470/suppl/GSM275470.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275471 | GPL339 |
|
Pten+/- mouse with CAH1
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
| Sample_geo_accession | GSM275471
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275471/suppl/GSM275471.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275471/suppl/GSM275471.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275472 | GPL339 |
|
Pten+/- mouse with CAH2
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
| Sample_geo_accession | GSM275472
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275472/suppl/GSM275472.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275472/suppl/GSM275472.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275473 | GPL339 |
|
Pten+/- mouse with CAH3
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
| Sample_geo_accession | GSM275473
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275473/suppl/GSM275473.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275473/suppl/GSM275473.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275474 | GPL339 |
|
Pten+/- mouse with CAH4
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
Pten+/-;Mlh1+/+ mouse with CAH
|
| Sample_geo_accession | GSM275474
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275474/suppl/GSM275474.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275474/suppl/GSM275474.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275475 | GPL339 |
|
Pten+/-;Mlh1-/- mouse with CAH5
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
| Sample_geo_accession | GSM275475
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275475/suppl/GSM275475.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275475/suppl/GSM275475.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275476 | GPL339 |
|
Pten+/-;Mlh1-/- mouse with CAH6
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
| Sample_geo_accession | GSM275476
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275476/suppl/GSM275476.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275476/suppl/GSM275476.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275477 | GPL339 |
|
Pten+/-;Mlh1-/- mouse with CAH7
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
| Sample_geo_accession | GSM275477
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275477/suppl/GSM275477.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275477/suppl/GSM275477.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275478 | GPL339 |
|
Pten+/-;Mlh1-/- mouse with CAH8
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
Pten+/-;Mlh1-/- mouse with CAH
|
| Sample_geo_accession | GSM275478
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275478/suppl/GSM275478.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275478/suppl/GSM275478.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275479 | GPL339 |
|
Pten+/- mouse with Invasion 1
|
Pten+/-;Mlh1+/+ mouse with invasive carcinoma
|
Pten+/-;Mlh1+/+ mouse with invasive carcinoma
|
Pten+/-;Mlh1+/+ mouse with invasive carcinoma
|
| Sample_geo_accession | GSM275479
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275479/suppl/GSM275479.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275479/suppl/GSM275479.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275480 | GPL339 |
|
Pten+/- mouse with Invasion 2
|
Pten+/-;Mlh1+/+ mouse with invasive carcinoma
|
Pten+/-;Mlh1+/+ mouse with invasive carcinoma
|
Pten+/-;Mlh1+/+ mouse with invasive carcinoma
|
| Sample_geo_accession | GSM275480
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275480/suppl/GSM275480.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275480/suppl/GSM275480.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275481 | GPL339 |
|
Pten+/-;Mlh1-/- mouse with Invasion 3
|
Pten+/-;Mlh1-/- mouse with invasive carcinoma
|
Pten+/-;Mlh1-/- mouse with invasive carcinoma
|
Pten+/-;Mlh1-/- mouse with invasive carcinoma
|
| Sample_geo_accession | GSM275481
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275481/suppl/GSM275481.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275481/suppl/GSM275481.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
GSM275482 | GPL339 |
|
Pten+/-;Mlh1-/- mouse with Invasion 4
|
Pten+/-;Mlh1-/- mouse with invasive carcinoma
|
Pten+/-;Mlh1-/- mouse with invasive carcinoma
|
Pten+/-;Mlh1-/- mouse with invasive carcinoma
|
| Sample_geo_accession | GSM275482
| | Sample_status | Public on Nov 20 2008
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Nov 20 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Uteri were dissected out and a quarter segment was snap frozen for RNA extraction.
| | Sample_growth_protocol_ch1 | Pten+/- and Mlh1+/- were maintained as separate lines. Pten+/-; Mlh1-/- mice were generated by crossing the two lines. Female mice were allowed to age and sacrificed between 16-32 weeks of age and uteri harvested
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | All RNAs were extracted using the Trizol reagent as per manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Ayesha,,Joshi
| | Sample_contact_email | ayj2002@med.cornell.edu
| | Sample_contact_phone | 212 746-6438
| | Sample_contact_department | Pathology and Laboratory Medicine
| | Sample_contact_institute | Weill Medical College of Cornell University
| | Sample_contact_address | 1300 York Avenue, Pathology
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275482/suppl/GSM275482.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275482/suppl/GSM275482.CHP.gz
| | Sample_series_id | GSE10866
| | Sample_data_row_count | 22690
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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