Search results for the GEO ID: GSE10867  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM275483 | GPL96 |
|
female 1_R475
|
antrum
|
Age: 24 years
|
no additional information
|
| Sample_geo_accession | GSM275483
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275483/suppl/GSM275483.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275483/suppl/GSM275483.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275484 | GPL96 |
|
female 1_R476
|
duodenum
|
Age: 24 years
|
no additional information
|
| Sample_geo_accession | GSM275484
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275484/suppl/GSM275484.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275484/suppl/GSM275484.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275485 | GPL96 |
|
female 1_R477
|
jejunum
|
Age: 24 years
|
no additional information
|
| Sample_geo_accession | GSM275485
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275485/suppl/GSM275485.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275485/suppl/GSM275485.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275486 | GPL96 |
|
female 1_R478
|
ileum
|
Age: 24 years
|
no additional information
|
| Sample_geo_accession | GSM275486
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275486/suppl/GSM275486.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275486/suppl/GSM275486.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275487 | GPL96 |
|
female 1_R479
|
transverse colon
|
Age: 24 years
|
no additional information
|
| Sample_geo_accession | GSM275487
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275487/suppl/GSM275487.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275487/suppl/GSM275487.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275488 | GPL96 |
|
female 2_R535
|
antrum
|
Age: 25 years
|
no additional information
|
| Sample_geo_accession | GSM275488
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275488/suppl/GSM275488.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275488/suppl/GSM275488.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275491 | GPL96 |
|
female 2_R538
|
ileum
|
Age: 25 years
|
no additional information
|
| Sample_geo_accession | GSM275491
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275491/suppl/GSM275491.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275491/suppl/GSM275491.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275492 | GPL96 |
|
female 2_R539
|
transverse colon
|
Age: 25 years
|
no additional information
|
| Sample_geo_accession | GSM275492
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275492/suppl/GSM275492.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275492/suppl/GSM275492.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275493 | GPL96 |
|
male 1_R550
|
antrum
|
Age: 22 years
|
no additional information
|
| Sample_geo_accession | GSM275493
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275493/suppl/GSM275493.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275493/suppl/GSM275493.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275494 | GPL96 |
|
male 1_R551
|
duodenum
|
Age: 22 years
|
no additional information
|
| Sample_geo_accession | GSM275494
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275494/suppl/GSM275494.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275494/suppl/GSM275494.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275495 | GPL96 |
|
male 1_R552
|
jejunum
|
Age: 22 years
|
no additional information
|
| Sample_geo_accession | GSM275495
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275495/suppl/GSM275495.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275495/suppl/GSM275495.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275496 | GPL96 |
|
male 1_R553
|
ileum
|
Age: 22 years
|
no additional information
|
| Sample_geo_accession | GSM275496
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275496/suppl/GSM275496.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275496/suppl/GSM275496.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275497 | GPL96 |
|
male 1_R554
|
transverse colon
|
Age: 22 years
|
no additional information
|
| Sample_geo_accession | GSM275497
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275497/suppl/GSM275497.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275497/suppl/GSM275497.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275498 | GPL96 |
|
male 2_R570
|
antrum
|
Age: 23 years
|
no additional information
|
| Sample_geo_accession | GSM275498
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275498/suppl/GSM275498.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275498/suppl/GSM275498.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275499 | GPL96 |
|
male 2_R571
|
duodenum
|
Age: 23 years
|
no additional information
|
| Sample_geo_accession | GSM275499
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275499/suppl/GSM275499.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275499/suppl/GSM275499.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275500 | GPL96 |
|
male 2_R572
|
jejunum
|
Age: 23 years
|
no additional information
|
| Sample_geo_accession | GSM275500
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275500/suppl/GSM275500.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275500/suppl/GSM275500.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275501 | GPL96 |
|
male 2_R573
|
ileum
|
Age: 23 years
|
no additional information
|
| Sample_geo_accession | GSM275501
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275501/suppl/GSM275501.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275501/suppl/GSM275501.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
GSM275502 | GPL96 |
|
male 2_R574
|
transverse colon
|
Age: 23 years
|
no additional information
|
| Sample_geo_accession | GSM275502
| | Sample_status | Public on Mar 20 2010
| | Sample_submission_date | Mar 17 2008
| | Sample_last_update_date | Mar 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TriPure Isolation reagent (Roche Diagnostics AG, Rotkreuz, Switzerland) and Dnase-I treated and purified with the Nucleospin kit (Macherey-Nagel AG, Oensingen, Switzerland). RNA quality was assessed with the Agilent 2100 Bioanalyzer and the RNA 6000 Nano LabChip kit (Agilent Biotechnologies, Waldbronn, Germany).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The samples were labeled according to the manufacturer's instructions (Affymetrix, High Wycombe, UK).
| | Sample_hyb_protocol | 5 µg of RNA from each sample were then independently amplified, labeled and hybridized to the HG-U133A Affymetrix chip (Affymetrix, High Wycombe, UK), according to the manufacturer’s instructions.
| | Sample_scan_protocol | The chips were scanned at 488 nm with an Argon-ion laser (Agilent Biotechnologies and Affymetrix).
| | Sample_data_processing | Expression signals were generated using the MAS 5.0 algorithm (Affymetrix), unscaled data.
| | Sample_platform_id | GPL96
| | Sample_contact_name | James,,Holzwarth
| | Sample_contact_email | james.holzwarth@rdls.nestle.com
| | Sample_contact_phone | +41 21 785 8909
| | Sample_contact_department | Bioanalytical Sciences
| | Sample_contact_institute | Nestle Research Center
| | Sample_contact_address |
| | Sample_contact_city | Lausanne
| | Sample_contact_state | Vaud
| | Sample_contact_zip/postal_code | 1000
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275502/suppl/GSM275502.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM275nnn/GSM275502/suppl/GSM275502.CHP.gz
| | Sample_series_id | GSE10867
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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