Search results for the GEO ID: GSE10934  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM277264 | GPL570 |
|
Sclera, P1
|
total RNA
|
Sclera, passage 1 (EY1401Sc,P1PD3)
|
none
|
| Sample_geo_accession | GSM277264
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277264/suppl/GSM277264_2470-G2-HM76_EY1401Sc_P1PD3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277264/suppl/GSM277264_2470-G2-HM76_EY1401Sc_P1PD3.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277265 | GPL570 |
|
Elastic cartilage, P1
|
total RNA
|
Elastic cartilage, passage 1 (Mim1501E,P1PD3)
|
none
|
| Sample_geo_accession | GSM277265
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277265/suppl/GSM277265_2484-G2-HM83_Mim1501E_P1PD3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277265/suppl/GSM277265_2484-G2-HM83_Mim1501E_P1PD3.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277266 | GPL570 |
|
Cortical bone, P3
|
total RNA
|
Cortical bone, passage 3 (Yub650BL P3PD5)
|
none
|
| Sample_geo_accession | GSM277266
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277266/suppl/GSM277266_2367-G2-HM69_Yub650BL_P3PD5.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277266/suppl/GSM277266_2367-G2-HM69_Yub650BL_P3PD5.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277267 | GPL570 |
|
Dermis, P2
|
total RNA
|
Dermis, passage 2 (Yub667DE,P2PD5)
|
none
|
| Sample_geo_accession | GSM277267
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277267/suppl/GSM277267_2468-G2-HM74_Yub667DE_P2PD5.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277267/suppl/GSM277267_2468-G2-HM74_Yub667DE_P2PD5.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277268 | GPL570 |
|
Periostium, P1
|
total RNA
|
Periostium, passage 1 (Yub673P,P1PD2)
|
none
|
| Sample_geo_accession | GSM277268
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277268/suppl/GSM277268_2483-G2-HM82_Yub673P_P1PD2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277268/suppl/GSM277268_2483-G2-HM82_Yub673P_P1PD2.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277269 | GPL570 |
|
Amniotic epithelium, P4
|
total RNA
|
Amniotic epithelium, passage 4 (AM910EP P4)
|
none
|
| Sample_geo_accession | GSM277269
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277269/suppl/GSM277269_2369-G2M-HM71_AM910EP_P4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277269/suppl/GSM277269_2369-G2M-HM71_AM910EP_P4.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277270 | GPL570 |
|
Umbilical cord (1), P0
|
total RNA
|
Umbilical cord (1), primary (UC712-1)
|
none
|
| Sample_geo_accession | GSM277270
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277270/suppl/GSM277270_2357-G2M_HA1_UC712-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277270/suppl/GSM277270_2357-G2M_HA1_UC712-1.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277271 | GPL570 |
|
Umbilical cord (2), P0
|
total RNA
|
Umbilical cord (2), primary (hUC)
|
none
|
| Sample_geo_accession | GSM277271
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277271/suppl/GSM277271_2576-G2-hUC.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277271/suppl/GSM277271_2576-G2-hUC.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277272 | GPL570 |
|
Hepatocyte, P0
|
total RNA
|
Hepatocyte, primary (Human primary hepatocyte)
|
none
|
| Sample_geo_accession | GSM277272
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277272/suppl/GSM277272_2347-G2-6Human_primary_hepatocyte.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277272/suppl/GSM277272_2347-G2-6Human_primary_hepatocyte.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM277273 | GPL570 |
|
Endometrium tissue
|
total RNA
|
Endometrium, tissue (UtE1104 tissue)
|
none
|
| Sample_geo_accession | GSM277273
| | Sample_status | Public on Apr 10 2008
| | Sample_submission_date | Mar 25 2008
| | Sample_last_update_date | Apr 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277273/suppl/GSM277273_2368-G2-HM70_UtE1104_tissue.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277273/suppl/GSM277273_2368-G2-HM70_UtE1104_tissue.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
| | |
|
GSM304352 | GPL570 |
|
Cornea, stroma, P1
|
total RNA
|
Cornea, stroma, passage 1 (EY1407Cor-st)
|
none
|
| Sample_geo_accession | GSM304352
| | Sample_status | Public on Jul 09 2008
| | Sample_submission_date | Jul 08 2008
| | Sample_last_update_date | Jul 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total cellular RNA was isolated with the RNeasy Mini Kit (Qiagen), according to manufacture's instructions.). Genomic DNA was eliminated by DNase I (TAKARA BIO INC.) treatments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates using the Enzo BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences), according to the manufacturer's protocol (One-Cycle Target Labeling and Control Reagent package).
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized with a probe array for 16h at 45C, and the hybridized biotinylated cRNA was stained with streptavidin-PE.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner (Palo Alto).
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Akihiro,,Umezawa
| | Sample_contact_email | umezawa@1985.jukuin.keio.ac.jp
| | Sample_contact_phone | 81-3-5494-7047
| | Sample_contact_fax | 81-3-5494-7048
| | Sample_contact_department | Reproductive Biology
| | Sample_contact_institute | National Center for Child Health and Development
| | Sample_contact_address | 2-10-1 Okura
| | Sample_contact_city | Setagaya-ku
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 157-8535
| | Sample_contact_country | Japan
| | Sample_contact_web_link | http://1985.jukuin.keio.ac.jp/umezawa/HTML
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304352/suppl/GSM304352.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304352/suppl/GSM304352.EXP.gz
| | Sample_series_id | GSE10934
| | Sample_data_row_count | 54675
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