Search results for the GEO ID: GSE10960 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM277636 | GPL570 |
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HeLa, s/as mock
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HeLa cells, s/as mock
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HeLa cells, s/as mock
|
Array was analyzed for sense and antisense strand enrichment of "seed"-complementary sequences. For details please see: Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G. RNA (2008) 14(2):263-74.
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Sample_geo_accession | GSM277636
| Sample_status | Public on Apr 02 2008
| Sample_submission_date | Mar 27 2008
| Sample_last_update_date | Mar 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Transfected with 50nM siRNA with RNAiMAX according to manufacturer (Invitrogen)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol; according to manufacturer (Invitrogen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to manufacturer (Affymetrix)
| Sample_hyb_protocol | According to manufacturer (Affymetrix)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | All arrays were condensed together using gcRMA with quantile normalization using bioconductor in R.
| Sample_platform_id | GPL570
| Sample_contact_name | Dimos,,Gaidatzis
| Sample_contact_email | d.gaidatzis@fmi.ch
| Sample_contact_institute | Friedrich Miescher Institute
| Sample_contact_address | Maulbeerstrasse 66
| Sample_contact_city | Basel
| Sample_contact_zip/postal_code | 4058
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277636/suppl/GSM277636.CEL.gz
| Sample_series_id | GSE10960
| Sample_data_row_count | 54675
| |
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GSM277637 | GPL570 |
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HeLa, s/as
|
HeLa cells, s/as
|
HeLa cells, s/as
|
Array was analyzed for sense and antisense strand enrichment of "seed"-complementary sequences. For details please see: Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G. RNA (2008) 14(2):263-74.
|
Sample_geo_accession | GSM277637
| Sample_status | Public on Apr 02 2008
| Sample_submission_date | Mar 27 2008
| Sample_last_update_date | Mar 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Transfected with 50nM siRNA with RNAiMAX according to manufacturer (Invitrogen)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol; according to manufacturer (Invitrogen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to manufacturer (Affymetrix)
| Sample_hyb_protocol | According to manufacturer (Affymetrix)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | All arrays were condensed together using gcRMA with quantile normalization using bioconductor in R.
| Sample_platform_id | GPL570
| Sample_contact_name | Dimos,,Gaidatzis
| Sample_contact_email | d.gaidatzis@fmi.ch
| Sample_contact_institute | Friedrich Miescher Institute
| Sample_contact_address | Maulbeerstrasse 66
| Sample_contact_city | Basel
| Sample_contact_zip/postal_code | 4058
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277637/suppl/GSM277637.CEL.gz
| Sample_series_id | GSE10960
| Sample_data_row_count | 54675
| |
|
GSM277638 | GPL570 |
|
HeLa, meT-s/as
|
HeLa cells, meT-s/as
|
HeLa cells, meT-s/as
|
Array was analyzed for sense and antisense strand enrichment of "seed"-complementary sequences. For details please see: Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G. RNA (2008) 14(2):263-74.
|
Sample_geo_accession | GSM277638
| Sample_status | Public on Apr 02 2008
| Sample_submission_date | Mar 27 2008
| Sample_last_update_date | Mar 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Transfected with 50nM siRNA with RNAiMAX according to manufacturer (Invitrogen)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol; according to manufacturer (Invitrogen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to manufacturer (Affymetrix)
| Sample_hyb_protocol | According to manufacturer (Affymetrix)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | All arrays were condensed together using gcRMA with quantile normalization using bioconductor in R.
| Sample_platform_id | GPL570
| Sample_contact_name | Dimos,,Gaidatzis
| Sample_contact_email | d.gaidatzis@fmi.ch
| Sample_contact_institute | Friedrich Miescher Institute
| Sample_contact_address | Maulbeerstrasse 66
| Sample_contact_city | Basel
| Sample_contact_zip/postal_code | 4058
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277638/suppl/GSM277638.CEL.gz
| Sample_series_id | GSE10960
| Sample_data_row_count | 54675
| |
|
GSM277639 | GPL570 |
|
HeLa, s/meT-as
|
HeLa cells, s/meT-as
|
HeLa cells, s/meT-as
|
Array was analyzed for sense and antisense strand enrichment of "seed"-complementary sequences. For details please see: Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G. RNA (2008) 14(2):263-74.
|
Sample_geo_accession | GSM277639
| Sample_status | Public on Apr 02 2008
| Sample_submission_date | Mar 27 2008
| Sample_last_update_date | Mar 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Transfected with 50nM siRNA with RNAiMAX according to manufacturer (Invitrogen)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol; according to manufacturer (Invitrogen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to manufacturer (Affymetrix)
| Sample_hyb_protocol | According to manufacturer (Affymetrix)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | All arrays were condensed together using gcRMA with quantile normalization using bioconductor in R.
| Sample_platform_id | GPL570
| Sample_contact_name | Dimos,,Gaidatzis
| Sample_contact_email | d.gaidatzis@fmi.ch
| Sample_contact_institute | Friedrich Miescher Institute
| Sample_contact_address | Maulbeerstrasse 66
| Sample_contact_city | Basel
| Sample_contact_zip/postal_code | 4058
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277639/suppl/GSM277639.CEL.gz
| Sample_series_id | GSE10960
| Sample_data_row_count | 54675
| |
|
GSM277640 | GPL570 |
|
HeLa, meT-a/meT-as
|
HeLa cells, meT-a/meT-as
|
HeLa cells, meT-a/meT-as
|
Array was analyzed for sense and antisense strand enrichment of "seed"-complementary sequences. For details please see: Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G. RNA (2008) 14(2):263-74.
|
Sample_geo_accession | GSM277640
| Sample_status | Public on Apr 02 2008
| Sample_submission_date | Mar 27 2008
| Sample_last_update_date | Mar 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Transfected with 50nM siRNA with RNAiMAX according to manufacturer (Invitrogen)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol; according to manufacturer (Invitrogen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to manufacturer (Affymetrix)
| Sample_hyb_protocol | According to manufacturer (Affymetrix)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | All arrays were condensed together using gcRMA with quantile normalization using bioconductor in R.
| Sample_platform_id | GPL570
| Sample_contact_name | Dimos,,Gaidatzis
| Sample_contact_email | d.gaidatzis@fmi.ch
| Sample_contact_institute | Friedrich Miescher Institute
| Sample_contact_address | Maulbeerstrasse 66
| Sample_contact_city | Basel
| Sample_contact_zip/postal_code | 4058
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277640/suppl/GSM277640.CEL.gz
| Sample_series_id | GSE10960
| Sample_data_row_count | 54675
| |
|
GSM277641 | GPL570 |
|
HeLa, PIK3CB-6340 mock
|
HeLa cells, PIK3CB-6340 mock
|
HeLa cells, PIK3CB-6340 mock
|
Array was analyzed for sense and antisense strand enrichment of "seed"-complementary sequences. For details please see: Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G. RNA (2008) 14(2):263-74.
|
Sample_geo_accession | GSM277641
| Sample_status | Public on Apr 02 2008
| Sample_submission_date | Mar 27 2008
| Sample_last_update_date | Mar 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Transfected with 50nM siRNA with RNAiMAX according to manufacturer (Invitrogen)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol; according to manufacturer (Invitrogen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to manufacturer (Affymetrix)
| Sample_hyb_protocol | According to manufacturer (Affymetrix)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | All arrays were condensed together using gcRMA with quantile normalization using bioconductor in R.
| Sample_platform_id | GPL570
| Sample_contact_name | Dimos,,Gaidatzis
| Sample_contact_email | d.gaidatzis@fmi.ch
| Sample_contact_institute | Friedrich Miescher Institute
| Sample_contact_address | Maulbeerstrasse 66
| Sample_contact_city | Basel
| Sample_contact_zip/postal_code | 4058
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277641/suppl/GSM277641.CEL.gz
| Sample_series_id | GSE10960
| Sample_data_row_count | 54675
| |
|
GSM277642 | GPL570 |
|
HeLa, PIK3CB-6340
|
HeLa cells, PIK3CB-6340
|
HeLa cells, PIK3CB-6340
|
Array was analyzed for sense and antisense strand enrichment of "seed"-complementary sequences. For details please see: Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G. RNA (2008) 14(2):263-74.
|
Sample_geo_accession | GSM277642
| Sample_status | Public on Apr 02 2008
| Sample_submission_date | Mar 27 2008
| Sample_last_update_date | Mar 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Transfected with 50nM siRNA with RNAiMAX according to manufacturer (Invitrogen)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol; according to manufacturer (Invitrogen)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | According to manufacturer (Affymetrix)
| Sample_hyb_protocol | According to manufacturer (Affymetrix)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 3000
| Sample_data_processing | All arrays were condensed together using gcRMA with quantile normalization using bioconductor in R.
| Sample_platform_id | GPL570
| Sample_contact_name | Dimos,,Gaidatzis
| Sample_contact_email | d.gaidatzis@fmi.ch
| Sample_contact_institute | Friedrich Miescher Institute
| Sample_contact_address | Maulbeerstrasse 66
| Sample_contact_city | Basel
| Sample_contact_zip/postal_code | 4058
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277642/suppl/GSM277642.CEL.gz
| Sample_series_id | GSE10960
| Sample_data_row_count | 54675
| |
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