Search results for the GEO ID: GSE10971 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM277776 | GPL570 |
|
non-malignant FTEn_patient 1
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 46
Cycle: Luteal
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the luteal phase
|
Sample_geo_accession | GSM277776
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277776/suppl/GSM277776.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277777 | GPL570 |
|
non-malignant FTEn_patient 2
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 46
Cycle: Luteal
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the luteal phase
|
Sample_geo_accession | GSM277777
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277777/suppl/GSM277777.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277778 | GPL570 |
|
non-malignant FTEn_patient 3
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 42
Cycle: Luteal
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the luteal phase
|
Sample_geo_accession | GSM277778
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277778/suppl/GSM277778.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277779 | GPL570 |
|
non-malignant FTEn_patient 4
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 36
Cycle: Luteal
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the luteal phase
|
Sample_geo_accession | GSM277779
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277779/suppl/GSM277779.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277780 | GPL570 |
|
non-malignant FTEn_patient 5
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 43
Cycle: Luteal
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the luteal phase
|
Sample_geo_accession | GSM277780
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277780/suppl/GSM277780.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277781 | GPL570 |
|
non-malignant FTEn_patient 6
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 47
Cycle: Luteal
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the luteal phase
|
Sample_geo_accession | GSM277781
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277781/suppl/GSM277781.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277782 | GPL570 |
|
non-malignant FTEn_patient 7
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 41
Cycle: Follicular
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the follicular phase
|
Sample_geo_accession | GSM277782
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277782/suppl/GSM277782.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277783 | GPL570 |
|
non-malignant FTEn_patient 8
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 42
Cycle: Follicular
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the follicular phase
|
Sample_geo_accession | GSM277783
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277783/suppl/GSM277783.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277784 | GPL570 |
|
non-malignant FTEn_patient 9
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 46
Cycle: Follicular
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the follicular phase
|
Sample_geo_accession | GSM277784
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277784/suppl/GSM277784.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277785 | GPL570 |
|
non-malignant FTEn_patient 10
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 47
Cycle: Follicular
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the follicular phase
|
Sample_geo_accession | GSM277785
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277785/suppl/GSM277785.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277786 | GPL570 |
|
non-malignant FTEn_patient 11
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 50
Cycle: Follicular
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the follicular phase
|
Sample_geo_accession | GSM277786
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277786/suppl/GSM277786.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277787 | GPL570 |
|
non-malignant FTEn_patient 12
|
Laser-capture microdissected non-malignant FTE from normal control patient
|
Age: 48
Cycle: Follicular
BRCA1/2 mutation: NA
Family History: No
|
Gene expression profile of non-malignant FTE from control patient during the follicular phase
|
Sample_geo_accession | GSM277787
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277787/suppl/GSM277787.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277788 | GPL570 |
|
non-malignant FTEb_patient 1
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 44
Cycle: Luteal
BRCA1/2 mutation: BRCA1 5382insC
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the luteal phase
|
Sample_geo_accession | GSM277788
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277788/suppl/GSM277788.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277789 | GPL570 |
|
non-malignant FTEb_patient 2
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 45
Cycle: Luteal
BRCA1/2 mutation: BRCA1 185delAG
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the luteal phase
|
Sample_geo_accession | GSM277789
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277789/suppl/GSM277789.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277790 | GPL570 |
|
non-malignant FTEb_patient 3
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 38
Cycle: Luteal
BRCA1/2 mutation: BRCA1 A1959T
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the luteal phase
|
Sample_geo_accession | GSM277790
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277790/suppl/GSM277790.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277791 | GPL570 |
|
non-malignant FTEb_patient 4
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 40
Cycle: Luteal
BRCA1/2 mutation: BRCA1 185delAG
Family History: Unknown
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the luteal phase
|
Sample_geo_accession | GSM277791
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277791/suppl/GSM277791.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277792 | GPL570 |
|
non-malignant FTEb_patient 5
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 39
Cycle: Luteal
BRCA1/2 mutation: BRCA1 185delAG
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the luteal phase
|
Sample_geo_accession | GSM277792
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277792/suppl/GSM277792.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277793 | GPL570 |
|
non-malignant FTEb_patient 6
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 46
Cycle: Luteal
BRCA1/2 mutation: BRCA2 C5910G
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the luteal phase
|
Sample_geo_accession | GSM277793
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277793/suppl/GSM277793.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277794 | GPL570 |
|
non-malignant FTEb_patient 7
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 42
Cycle: Follicular
BRCA1/2 mutation: BRCA1 5382insC
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the follicular phase
|
Sample_geo_accession | GSM277794
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277794/suppl/GSM277794.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277795 | GPL570 |
|
non-malignant FTEb_patient 8
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 40
Cycle: Follicular
BRCA1/2 mutation: BRCA1 185delAG
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the follicular phase
|
Sample_geo_accession | GSM277795
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277795/suppl/GSM277795.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277796 | GPL570 |
|
non-malignant FTEb_patient 9
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 47
Cycle: Follicular
BRCA1/2 mutation: BRCA2 6174delT
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the follicular phase
|
Sample_geo_accession | GSM277796
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277796/suppl/GSM277796.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277797 | GPL570 |
|
non-malignant FTEb_patient 10
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 39
Cycle: Follicular
BRCA1/2 mutation: BRCA1 1293del40
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the follicular phase
|
Sample_geo_accession | GSM277797
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277797/suppl/GSM277797.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277798 | GPL570 |
|
non-malignant FTEb_patient 11
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 37
Cycle: Follicular
BRCA1/2 mutation: BRCA1 185delAG
Family History: Unknown
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the follicular phase
|
Sample_geo_accession | GSM277798
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277798/suppl/GSM277798.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277799 | GPL570 |
|
non-malignant FTEb_patient 12
|
Laser-capture microdissected non-malignant FTE from BRCA1/2-mutation carrier
|
Age: 39
Cycle: Follicular
BRCA1/2 mutation: BRCA1 185delAG
Family History: Yes
|
Gene expression profile of non-malignant FTE from BRCA1/2-mutation carrier during the follicular phase
|
Sample_geo_accession | GSM277799
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277799/suppl/GSM277799.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277800 | GPL570 |
|
high grade serous carcinoma_patient 1
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 41
Cycle: NA
BRCA1/2 mutation: Negative
Family History: No
|
Gene expression profile of high grade serous carcinoma of fallopian tube
|
Sample_geo_accession | GSM277800
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277800/suppl/GSM277800.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277801 | GPL570 |
|
high grade serous carcinoma_patient 2_sample 1
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 57
Cycle: NA
BRCA1/2 mutation: Unknown
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of fallopian tube
|
Sample_geo_accession | GSM277801
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277801/suppl/GSM277801.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277802 | GPL570 |
|
high grade serous carcinoma_patient 3_sample 1
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 57
Cycle: NA
BRCA1/2 mutation: Unknown
Family History: No
|
Gene expression profile of high grade serous carcinoma of fallopian tube
|
Sample_geo_accession | GSM277802
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277802/suppl/GSM277802.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277803 | GPL570 |
|
high grade serous carcinoma_patient 4
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 59
Cycle: NA
BRCA1/2 mutation: Unknown
Family History: No
|
Gene expression profile of high grade serous carcinoma of fallopian tube
|
Sample_geo_accession | GSM277803
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277803/suppl/GSM277803.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277804 | GPL570 |
|
high grade serous carcinoma_patient 5
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 57
Cycle: NA
BRCA1/2 mutation: Unknown
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of fallopian tube
|
Sample_geo_accession | GSM277804
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277804/suppl/GSM277804.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277805 | GPL570 |
|
high grade serous carcinoma_patient 6
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 58
Cycle: NA
BRCA1/2 mutation: BRCA1
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of fallopian tube
|
Sample_geo_accession | GSM277805
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277805/suppl/GSM277805.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277806 | GPL570 |
|
high grade serous carcinoma_patient 7
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 54
Cycle: NA
BRCA1/2 mutation: BRCA1
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of ovary
|
Sample_geo_accession | GSM277806
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277806/suppl/GSM277806.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277807 | GPL570 |
|
high grade serous carcinoma_patient 8
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 55
Cycle: NA
BRCA1/2 mutation: Unknown
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of ovary
|
Sample_geo_accession | GSM277807
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277807/suppl/GSM277807.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277808 | GPL570 |
|
high grade serous carcinoma_patient 9
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 50
Cycle: NA
BRCA1/2 mutation: BRCA1 917delTT
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of ovary
|
Sample_geo_accession | GSM277808
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277808/suppl/GSM277808.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277809 | GPL570 |
|
high grade serous carcinoma_patient 10
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 42
Cycle: NA
BRCA1/2 mutation: BRCA1 3875delGTCT
Family History: No
|
Gene expression profile of high grade serous carcinoma of ovary
|
Sample_geo_accession | GSM277809
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277809/suppl/GSM277809.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277810 | GPL570 |
|
high grade serous carcinoma_patient 2_sample 2
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 57
Cycle: NA
BRCA1/2 mutation: Unknown
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of ovary
|
Sample_geo_accession | GSM277810
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277810/suppl/GSM277810.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277811 | GPL570 |
|
high grade serous carcinoma_patient 3_sample 2
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 57
Cycle: NA
BRCA1/2 mutation: Unknown
Family History: No
|
Gene expression profile of high grade serous carcinoma of ovary
|
Sample_geo_accession | GSM277811
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277811/suppl/GSM277811.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
GSM277812 | GPL570 |
|
high grade serous carcinoma_patient 11
|
Laser-capture microdissected high grade serous carcinoma
|
Age: 32
Cycle: NA
BRCA1/2 mutation: BRCA1
Family History: Yes
|
Gene expression profile of high grade serous carcinoma of ovary
|
Sample_geo_accession | GSM277812
| Sample_status | Public on May 31 2008
| Sample_submission_date | Mar 28 2008
| Sample_last_update_date | Mar 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser capture microdissection was used to isolate epithelial cells from snap-frozen surgical specimens. Total RNA was then isolated using the Stratagene Absolutely RNA MicroPrep kit.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Reverse-transcription, linear amplification and biotin labeling was performed using the NuGEN Biotin Ovation kit (from 10ng of input total RNA).
| Sample_hyb_protocol | Biotin-labeled cDNA was hybridized to Affymetrix GeneChip U133A Plus 2.0 arrays according to manufacturer's instructions.
| Sample_scan_protocol | Slides were scanned using the Affymetrix 7G scanner, and CEL files generated using the GeneChip Operating System (GCOS)
| Sample_data_processing | All CEL files were imported into ArrayAssist and the Robust Multi-Array Averge (RMA) algorithm was applied.
| Sample_platform_id | GPL570
| Sample_contact_name | Patricia,A,Shaw
| Sample_contact_email | patricia.shaw@uhn.on.ca
| Sample_contact_department | Department of Pathology
| Sample_contact_institute | University Health Network
| Sample_contact_address | 200 Elizabeth St
| Sample_contact_city | Toronto
| Sample_contact_state | Ontario
| Sample_contact_zip/postal_code | M5G2C4
| Sample_contact_country | Canada
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM277nnn/GSM277812/suppl/GSM277812.CEL.gz
| Sample_series_id | GSE10971
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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