Search results for the GEO ID: GSE11013  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM278515 | GPL1261 |
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334_4
|
Dp(11)17/+, hippocampus, individual 334
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Strain: C57BL/6-Tyr c-Brd, Genotype: Dp(11)17/+, Gender: male, Age: 11-14 weeks of age, Tissue: hippocampus
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n/a
|
| Sample_geo_accession | GSM278515
| | Sample_status | Public on Nov 30 2009
| | Sample_submission_date | Apr 01 2008
| | Sample_last_update_date | Feb 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mice were sacrificed by cervical dislocation. RNA from whole brain, testis, kidney, heart, liver and lung was isolated with TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor affy and affyPLM packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexandre,,Reymond
| | Sample_contact_email | alexandre.reymond@unil.ch
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Genopode building
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278515/suppl/GSM278515.CEL.gz
| | Sample_series_id | GSE11013
| | Sample_data_row_count | 45101
| | |
|
GSM278516 | GPL1261 |
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338_12
|
Dp(11)17/+, hippocampus, individual 338
|
Strain: C57BL/6-Tyr c-Brd, Genotype: Dp(11)17/+, Gender: male, Age: 11-14 weeks of age, Tissue: hippocampus
|
n/a
|
| Sample_geo_accession | GSM278516
| | Sample_status | Public on Nov 30 2009
| | Sample_submission_date | Apr 01 2008
| | Sample_last_update_date | Feb 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mice were sacrificed by cervical dislocation. RNA from whole brain, testis, kidney, heart, liver and lung was isolated with TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor affy and affyPLM packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexandre,,Reymond
| | Sample_contact_email | alexandre.reymond@unil.ch
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Genopode building
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278516/suppl/GSM278516.CEL.gz
| | Sample_series_id | GSE11013
| | Sample_data_row_count | 45101
| | |
|
GSM278517 | GPL1261 |
|
339_9
|
Dp(11)17/+, hippocampus, individual 339
|
Strain: C57BL/6-Tyr c-Brd, Genotype: Dp(11)17/+, Gender: male, Age: 11-14 weeks of age, Tissue: hippocampus
|
n/a
|
| Sample_geo_accession | GSM278517
| | Sample_status | Public on Nov 30 2009
| | Sample_submission_date | Apr 01 2008
| | Sample_last_update_date | Feb 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mice were sacrificed by cervical dislocation. RNA from whole brain, testis, kidney, heart, liver and lung was isolated with TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor affy and affyPLM packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexandre,,Reymond
| | Sample_contact_email | alexandre.reymond@unil.ch
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Genopode building
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278517/suppl/GSM278517.CEL.gz
| | Sample_series_id | GSE11013
| | Sample_data_row_count | 45101
| | |
|
GSM278518 | GPL1261 |
|
192_11
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C57BL/6-Tyr c-Brd, hippocampus, individual 192
|
Strain: C57BL/6-Tyr c-Brd, Genotype: +/+, Gender: male, Age: 11-14 weeks of age, Tissue: hippocampus
|
n/a
|
| Sample_geo_accession | GSM278518
| | Sample_status | Public on Nov 30 2009
| | Sample_submission_date | Apr 01 2008
| | Sample_last_update_date | Feb 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mice were sacrificed by cervical dislocation. RNA from whole brain, testis, kidney, heart, liver and lung was isolated with TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor affy and affyPLM packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexandre,,Reymond
| | Sample_contact_email | alexandre.reymond@unil.ch
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Genopode building
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278518/suppl/GSM278518.CEL.gz
| | Sample_series_id | GSE11013
| | Sample_data_row_count | 45101
| | |
|
GSM278519 | GPL1261 |
|
226_7
|
C57BL/6-Tyr c-Brd, hippocampus, individual 226
|
Strain: C57BL/6-Tyr c-Brd, Genotype: +/+, Gender: male, Age: 11-14 weeks of age, Tissue: hippocampus
|
n/a
|
| Sample_geo_accession | GSM278519
| | Sample_status | Public on Nov 30 2009
| | Sample_submission_date | Apr 01 2008
| | Sample_last_update_date | Feb 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mice were sacrificed by cervical dislocation. RNA from whole brain, testis, kidney, heart, liver and lung was isolated with TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor affy and affyPLM packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexandre,,Reymond
| | Sample_contact_email | alexandre.reymond@unil.ch
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Genopode building
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278519/suppl/GSM278519.CEL.gz
| | Sample_series_id | GSE11013
| | Sample_data_row_count | 45101
| | |
|
GSM278520 | GPL1261 |
|
227_3
|
C57BL/6-Tyr c-Brd, hippocampus, individual 227
|
Strain: C57BL/6-Tyr c-Brd, Genotype: +/+, Gender: male, Age: 11-14 weeks of age, Tissue: hippocampus
|
n/a
|
| Sample_geo_accession | GSM278520
| | Sample_status | Public on Nov 30 2009
| | Sample_submission_date | Apr 01 2008
| | Sample_last_update_date | Feb 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mice were sacrificed by cervical dislocation. RNA from whole brain, testis, kidney, heart, liver and lung was isolated with TRIzol (Invitrogen) and purified on Qiagen RNeasy Mini columns (Qiagen), according to manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Target preparations were performed as described by the Affymetrix GeneChip Expression Analysis Technical Manual (http://www.affymetrix.com), and were conducted at the DNA array facility of the University of Lausanne (Switzerland). 3 ug of each pool was used.
| | Sample_hyb_protocol | Twelve micrograms of biotinylated cRNA from each sample were fragmented and hybridized to GeneChip Mouse 430 2.0 arrays, according to standard procedures. Washing and staining was performed using the EuGE-WS2v5 protocol.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G and hybridization quality control were assessed using RACE (Psarros et al., 2005), a web service based on Bioconductor affy and affyPLM packages (Gautier et al., 2004).
| | Sample_data_processing | Normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Alexandre,,Reymond
| | Sample_contact_email | alexandre.reymond@unil.ch
| | Sample_contact_department | Center for Integrative Genomics
| | Sample_contact_institute | University of Lausanne
| | Sample_contact_address | Genopode building
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | 1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278520/suppl/GSM278520.CEL.gz
| | Sample_series_id | GSE11013
| | Sample_data_row_count | 45101
| | |
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