Search results for the GEO ID: GSE11024 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM278765 | GPL6671 |
|
CC_KIDNEY_1
|
Renal Tumor
|
Age:46
Gender: F
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278765
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278765/suppl/GSM278765.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278766 | GPL6671 |
|
CC_KIDNEY_2
|
Renal Tumor
|
Age:61
Gender: F
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278766
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278766/suppl/GSM278766.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278767 | GPL6671 |
|
CC_KIDNEY_3
|
Renal Tumor
|
Age:67
Gender: F
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278767
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278767/suppl/GSM278767.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278768 | GPL6671 |
|
CC_KIDNEY_4
|
Renal Tumor
|
Age:47
Gender: F
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278768
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278768/suppl/GSM278768.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278769 | GPL6671 |
|
CC_KIDNEY_5
|
Renal Tumor
|
Age:38
Gender: F
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278769
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278769/suppl/GSM278769.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278770 | GPL6671 |
|
CC_KIDNEY_6
|
Renal Tumor
|
Age:72
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278770
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278770/suppl/GSM278770.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278771 | GPL6671 |
|
CC_KIDNEY_7
|
Renal Tumor
|
Age:34
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278771
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278771/suppl/GSM278771.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278772 | GPL6671 |
|
CC_KIDNEY_8
|
Renal Tumor
|
Age:63
Gender: M
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278772
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278772/suppl/GSM278772.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278773 | GPL6671 |
|
CC_KIDNEY_9
|
Renal Tumor
|
Age:45
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278773
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278773/suppl/GSM278773.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278774 | GPL6671 |
|
CC_KIDNEY_10
|
Renal Tumor
|
Age:47
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278774
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278774/suppl/GSM278774.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278775 | GPL6671 |
|
CHR_KIDNEY_1
|
Renal Tumor
|
Age:53
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278775
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278775/suppl/GSM278775.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278776 | GPL6671 |
|
CHR_KIDNEY_2
|
Renal Tumor
|
Age:79
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278776
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278776/suppl/GSM278776.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278777 | GPL6671 |
|
CHR_KIDNEY_4
|
Renal Tumor
|
Age:52
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278777
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278777/suppl/GSM278777.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278778 | GPL6671 |
|
CHR_KIDNEY_7
|
Renal Tumor
|
Age:73
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278778
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278778/suppl/GSM278778.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278779 | GPL6671 |
|
CHR_KIDNEY_9
|
Renal Tumor
|
Age:37
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278779
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278779/suppl/GSM278779.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278780 | GPL6671 |
|
CHR_KIDNEY_11
|
Renal Tumor
|
Age:44
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278780
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278780/suppl/GSM278780.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278781 | GPL6671 |
|
NO_KIDNEY_1
|
Normal kidney
|
Age:74
Gender: M
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278781
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278781/suppl/GSM278781.CEL.gz
| Sample_relation | Reanalyzed by: GSM543315
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278782 | GPL6671 |
|
NO_KIDNEY_2
|
Normal kidney
|
Age:2
Gender: M
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278782
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278782/suppl/GSM278782.CEL.gz
| Sample_relation | Reanalyzed by: GSM543316
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278783 | GPL6671 |
|
NO_KIDNEY_3
|
Normal kidney
|
Age:12
Gender: M
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278783
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278783/suppl/GSM278783.CEL.gz
| Sample_relation | Reanalyzed by: GSM543317
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278784 | GPL6671 |
|
NO_KIDNEY_4
|
Normal kidney
|
Age:4
Gender: F
Stage: 2
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278784
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278784/suppl/GSM278784.CEL.gz
| Sample_relation | Reanalyzed by: GSM543318
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278785 | GPL6671 |
|
NO_KIDNEY_5
|
Normal kidney
|
Age:58
Gender: M
Stage: 3
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278785
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278785/suppl/GSM278785.CEL.gz
| Sample_relation | Reanalyzed by: GSM543319
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278786 | GPL6671 |
|
NO_KIDNEY_6
|
Normal kidney
|
Age:1
Gender: M
Stage: 1
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278786
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278786/suppl/GSM278786.CEL.gz
| Sample_relation | Reanalyzed by: GSM543320
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278787 | GPL6671 |
|
NO_KIDNEY_7
|
Normal kidney
|
Age:36
Gender: F
Stage: 1
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278787
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278787/suppl/GSM278787.CEL.gz
| Sample_relation | Reanalyzed by: GSM543321
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278788 | GPL6671 |
|
NO_KIDNEY_8
|
Normal kidney
|
Age:59
Gender: M
Stage: 4
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278788
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278788/suppl/GSM278788.CEL.gz
| Sample_relation | Reanalyzed by: GSM543322
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278789 | GPL6671 |
|
NO_KIDNEY_9
|
Normal kidney
|
Age:74
Gender: M
Stage: 3
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278789
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278789/suppl/GSM278789.CEL.gz
| Sample_relation | Reanalyzed by: GSM543323
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278790 | GPL6671 |
|
NO_KIDNEY_10
|
Normal kidney
|
Age:68
Gender: M
Stage: 4
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278790
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278790/suppl/GSM278790.CEL.gz
| Sample_relation | Reanalyzed by: GSM543324
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278791 | GPL6671 |
|
NO_KIDNEY_11
|
Normal kidney
|
Age:77
Gender: M
Stage: 3
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278791
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | May 14 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278791/suppl/GSM278791.CEL.gz
| Sample_relation | Reanalyzed by: GSM543325
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278792 | GPL6671 |
|
NO_KIDNEY_12
|
Normal kidney
|
Age:70
Gender: F
Stage: 1
Normal kidney
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278792
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278792/suppl/GSM278792.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278793 | GPL6671 |
|
ON_KIDNEY_2
|
Renal Tumor
|
Age: Unknown
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278793
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278793/suppl/GSM278793.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278794 | GPL6671 |
|
ON_KIDNEY_3
|
Renal Tumor
|
Age: Unknown
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278794
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278794/suppl/GSM278794.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278795 | GPL6671 |
|
ON_KIDNEY_4
|
Renal Tumor
|
Age: Unknown
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278795
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278795/suppl/GSM278795.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278796 | GPL6671 |
|
ON_KIDNEY_5
|
Renal Tumor
|
Age: Unknown
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278796
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278796/suppl/GSM278796.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278797 | GPL6671 |
|
ON_KIDNEY_6
|
Renal Tumor
|
Age: Unknown
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278797
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278797/suppl/GSM278797.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278798 | GPL6671 |
|
ON_KIDNEY_7
|
Renal Tumor
|
Age: Unknown
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278798
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278798/suppl/GSM278798.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278799 | GPL6671 |
|
ON_KIDNEY_8
|
Renal Tumor
|
Age: Unknown
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278799
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278799/suppl/GSM278799.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278800 | GPL6671 |
|
P1_KIDNEY_1
|
Renal Tumor
|
Age:59
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278800
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278800/suppl/GSM278800.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278801 | GPL6671 |
|
P1_KIDNEY_2
|
Renal Tumor
|
Age:68
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278801
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278801/suppl/GSM278801.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278802 | GPL6671 |
|
P1_KIDNEY_3
|
Renal Tumor
|
Age:69
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278802
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278802/suppl/GSM278802.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278803 | GPL6671 |
|
P1_KIDNEY_4
|
Renal Tumor
|
Age:72
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278803
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278803/suppl/GSM278803.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278804 | GPL6671 |
|
P1_KIDNEY_5
|
Renal Tumor
|
Age:73
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278804
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278804/suppl/GSM278804.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278805 | GPL6671 |
|
P1_KIDNEY_6
|
Renal Tumor
|
Age:86
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278805
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278805/suppl/GSM278805.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278806 | GPL6671 |
|
P1_KIDNEY_8
|
Renal Tumor
|
Age:55
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278806
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278806/suppl/GSM278806.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278807 | GPL6671 |
|
P1_KIDNEY_9
|
Renal Tumor
|
Age:79
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278807
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278807/suppl/GSM278807.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278808 | GPL6671 |
|
P1_KIDNEY_11
|
Renal Tumor
|
Age:44
Gender: M
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278808
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278808/suppl/GSM278808.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278809 | GPL6671 |
|
P1_KIDNEY_18
|
Renal Tumor
|
Age:74
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278809
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278809/suppl/GSM278809.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278810 | GPL6671 |
|
P1_KIDNEY_19
|
Renal Tumor
|
Age:37
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278810
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278810/suppl/GSM278810.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278811 | GPL6671 |
|
P2_KIDNEY_2
|
Renal Tumor
|
Age:46
Gender: F
Stage: 4
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278811
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278811/suppl/GSM278811.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278812 | GPL6671 |
|
P2_KIDNEY_3
|
Renal Tumor
|
Age:73
Gender: M
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278812
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278812/suppl/GSM278812.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278813 | GPL6671 |
|
P2_KIDNEY_4
|
Renal Tumor
|
Age:70
Gender: F
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278813
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278813/suppl/GSM278813.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278814 | GPL6671 |
|
P2_KIDNEY_11
|
Renal Tumor
|
Age:56
Gender: M
Stage: 4
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278814
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278814/suppl/GSM278814.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278815 | GPL6671 |
|
P2_KIDNEY_12
|
Renal Tumor
|
Age:71
Gender: F
Stage: 4
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278815
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278815/suppl/GSM278815.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278816 | GPL6671 |
|
P2_KIDNEY_13
|
Renal Tumor
|
Age:49
Gender: F
Stage: 4
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278816
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278816/suppl/GSM278816.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278817 | GPL6671 |
|
WM_KIDNEY_53
|
Renal Tumor
|
Age:43
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278817
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278817/suppl/GSM278817.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278818 | GPL6671 |
|
WM_KIDNEY_54
|
Renal Tumor
|
Age:3
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278818
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278818/suppl/GSM278818.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278819 | GPL6671 |
|
WM_KIDNEY_55
|
Renal Tumor
|
Age:2
Gender: M
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278819
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278819/suppl/GSM278819.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278820 | GPL6671 |
|
WM_KIDNEY_56
|
Renal Tumor
|
Age:0
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278820
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278820/suppl/GSM278820.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278821 | GPL6671 |
|
WM_KIDNEY_57
|
Renal Tumor
|
Age:2
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278821
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278821/suppl/GSM278821.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278822 | GPL6671 |
|
WM_KIDNEY_58
|
Renal Tumor
|
Age:2
Gender: M
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278822
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278822/suppl/GSM278822.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278823 | GPL6671 |
|
WM_KIDNEY_59
|
Renal Tumor
|
Age:1
Gender: M
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278823
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278823/suppl/GSM278823.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278824 | GPL6671 |
|
WM_KIDNEY_60
|
Renal Tumor
|
Age:3
Gender: M
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278824
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278824/suppl/GSM278824.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278825 | GPL6671 |
|
WM_KIDNEY_61
|
Renal Tumor
|
Age:12
Gender: M
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278825
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278825/suppl/GSM278825.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278826 | GPL6671 |
|
WM_KIDNEY_62
|
Renal Tumor
|
Age:4
Gender: F
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278826
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278826/suppl/GSM278826.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278827 | GPL6671 |
|
WM_KIDNEY_63
|
Renal Tumor
|
Age:1
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278827
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278827/suppl/GSM278827.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278828 | GPL6671 |
|
WM_KIDNEY_64
|
Renal Tumor
|
Age:1
Gender: M
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278828
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278828/suppl/GSM278828.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278829 | GPL6671 |
|
WM_KIDNEY_65
|
Renal Tumor
|
Age:3
Gender: M
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278829
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278829/suppl/GSM278829.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278830 | GPL6671 |
|
WM_KIDNEY_66
|
Renal Tumor
|
Age:1
Gender: M
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278830
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278830/suppl/GSM278830.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278831 | GPL6671 |
|
WM_KIDNEY_67
|
Renal Tumor
|
Age: Unknown
Gender: Unknown
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278831
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278831/suppl/GSM278831.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278832 | GPL6671 |
|
WM_KIDNEY_68
|
Renal Tumor
|
Age: Unknown
Gender: Unknown
Stage: Unknown
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278832
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278832/suppl/GSM278832.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278833 | GPL6671 |
|
WM_KIDNEY_69
|
Renal Tumor
|
Age: Unknown
Gender: F
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278833
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278833/suppl/GSM278833.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278834 | GPL6671 |
|
WM_KIDNEY_70
|
Renal Tumor
|
Age: Unknown
Gender: M
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278834
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278834/suppl/GSM278834.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278835 | GPL6671 |
|
WM_KIDNEY_71
|
Renal Tumor
|
Age: Unknown
Gender: F
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278835
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278835/suppl/GSM278835.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278836 | GPL6671 |
|
WM_KIDNEY_72
|
Renal Tumor
|
Age: Unknown
Gender: F
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278836
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278836/suppl/GSM278836.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278837 | GPL6671 |
|
WM_KIDNEY_73
|
Renal Tumor
|
Age: Unknown
Gender: M
Stage: 2
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278837
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278837/suppl/GSM278837.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278838 | GPL6671 |
|
WM_KIDNEY_74
|
Renal Tumor
|
Age: Unknown
Gender: F
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278838
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278838/suppl/GSM278838.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278839 | GPL6671 |
|
WM_KIDNEY_75
|
Renal Tumor
|
Age: Unknown
Gender: F
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278839
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278839/suppl/GSM278839.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278840 | GPL6671 |
|
WM_KIDNEY_76
|
Renal Tumor
|
Age: Unknown
Gender: F
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278840
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278840/suppl/GSM278840.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278841 | GPL6671 |
|
WM_KIDNEY_77
|
Renal Tumor
|
Age: Unknown
Gender: F
Stage: 1
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278841
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278841/suppl/GSM278841.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278842 | GPL6671 |
|
WM_KIDNEY_78
|
Renal Tumor
|
Age: Unknown
Gender: M
Stage: 3
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278842
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278842/suppl/GSM278842.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
| |
|
GSM278843 | GPL6671 |
|
WM_KIDNEY_79
|
Renal Tumor
|
Age: Unknown
Gender: M
Stage: 4
Renal Tumor
|
Clear cell, chromophobe, papillary (types 1 and 2), oncocytoma, and Wilms tumor were compared to normal kidney tissue.
|
Sample_geo_accession | GSM278843
| Sample_status | Public on Jun 05 2008
| Sample_submission_date | Apr 02 2008
| Sample_last_update_date | Jun 05 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to manufacturer's protocol
| Sample_label_ch1 | SAPE
| Sample_label_protocol_ch1 | 10 ug of Qiagen-purified total RNA was labeled with 6ul of 1mg/ml R-Phycoerythrin Streptavidin (SAPE)
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G
| Sample_data_processing | The data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used. Data were then rma normalized using R and the bioconductor suite of analysis tools (eset <- rma(ab))
| Sample_platform_id | GPL6671
| Sample_contact_name | Eric,,Kort
| Sample_contact_institute | Van Andel Research Institute
| Sample_contact_address | 333 Bostwick NE
| Sample_contact_city | Grand Rapids
| Sample_contact_state | MI
| Sample_contact_zip/postal_code | 49503
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM278nnn/GSM278843/suppl/GSM278843.CEL.gz
| Sample_series_id | GSE11024
| Sample_data_row_count | 17699
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