Search results for the GEO ID: GSE11151  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM281278 | GPL570 |
|
clear cell sarcoma of the kidney; CCSK_HA302
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281278
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281278/suppl/GSM281278.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281279 | GPL570 |
|
collecting duct carcinoma; CDC_HD85
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281279
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281279/suppl/GSM281279.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281280 | GPL570 |
|
collecting duct carcinoma; CDC_HD91
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281280
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281280/suppl/GSM281280.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281281 | GPL570 |
|
chromophobe renal cell cancer; chRCC_HA315
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281281
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281281/suppl/GSM281281.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281282 | GPL570 |
|
chromophobe renal cell cancer; chRCC_HA417
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281282
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281282/suppl/GSM281282.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281283 | GPL570 |
|
chromophobe renal cell cancer; chRCC_HA88
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281283
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281283/suppl/GSM281283.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281284 | GPL570 |
|
chromophobe renal cell cancer; chRCC_HD29
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281284
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281284/suppl/GSM281284.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281285 | GPL570 |
|
conventional renal cell cancer; cRCCa_HA322
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281285
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281285/suppl/GSM281285.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281286 | GPL570 |
|
conventional renal cell cancer; cRCCa_HA343
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281286
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281286/suppl/GSM281286.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281287 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD114
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281287
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281287/suppl/GSM281287.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281288 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD140
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281288
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281288/suppl/GSM281288.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281289 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD172A
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281289
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281289/suppl/GSM281289.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281290 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD172B
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281290
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281290/suppl/GSM281290.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281291 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD18
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281291
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281291/suppl/GSM281291.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281292 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD212
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281292
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281292/suppl/GSM281292.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281293 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD33
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281293
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281293/suppl/GSM281293.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281294 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD34
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281294
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281294/suppl/GSM281294.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281295 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD42
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281295
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281295/suppl/GSM281295.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281296 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD44
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281296
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281296/suppl/GSM281296.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281297 | GPL570 |
|
conventional renal cell cancer; cRCCa_HD63
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281297
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281297/suppl/GSM281297.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281298 | GPL570 |
|
conventional renal cell cancer; cRCCb_HA181
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281298
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281298/suppl/GSM281298.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281299 | GPL570 |
|
conventional renal cell cancer; cRCCb_HA306
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281299
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281299/suppl/GSM281299.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281300 | GPL570 |
|
conventional renal cell cancer; cRCCb_HA312
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281300
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281300/suppl/GSM281300.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281301 | GPL570 |
|
conventional renal cell cancer; cRCCb_HA344
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281301
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281301/suppl/GSM281301.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281302 | GPL570 |
|
conventional renal cell cancer; cRCCb_HA463
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281302
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281302/suppl/GSM281302.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281303 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD110B
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281303
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281303/suppl/GSM281303.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281304 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD115A
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281304
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281304/suppl/GSM281304.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281305 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD12
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281305
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281305/suppl/GSM281305.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281306 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD2
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281306
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281306/suppl/GSM281306.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281307 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD214
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281307
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281307/suppl/GSM281307.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281308 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD49B
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281308
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281308/suppl/GSM281308.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281309 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD58
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281309
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281309/suppl/GSM281309.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281310 | GPL570 |
|
conventional renal cell cancer; cRCCb_HD93
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281310
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281310/suppl/GSM281310.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281311 | GPL570 |
|
fetal normal kidney; Fkfemale_FKF
|
renal tissue
|
normal kidney
|
gene expression data for normal kidney
|
| Sample_geo_accession | GSM281311
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281311/suppl/GSM281311.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281313 | GPL570 |
|
renal lipoma ; LP_HD1847
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281313
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281313/suppl/GSM281313.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281314 | GPL570 |
|
adult normal kidney; NK1a_AK1
|
renal tissue
|
normal kidney
|
gene expression data for normal kidney
|
| Sample_geo_accession | GSM281314
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281314/suppl/GSM281314.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281315 | GPL570 |
|
adult normal kidney; NK1b_AK1
|
renal tissue
|
normal kidney
|
gene expression data for normal kidney
|
| Sample_geo_accession | GSM281315
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281315/suppl/GSM281315.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281316 | GPL570 |
|
adult normal kidney; NK2b_AK2
|
renal tissue
|
normal kidney
|
gene expression data for normal kidney
|
| Sample_geo_accession | GSM281316
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281316/suppl/GSM281316.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281317 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD100
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281317
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281317/suppl/GSM281317.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281318 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD101
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281318
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281318/suppl/GSM281318.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281319 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD108
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281319
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281319/suppl/GSM281319.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281320 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD1562T1
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281320
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281320/suppl/GSM281320.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281321 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD1562T2
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281321
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281321/suppl/GSM281321.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281322 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD193A
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281322
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281322/suppl/GSM281322.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281323 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD193B
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281323
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281323/suppl/GSM281323.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281324 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD208
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281324
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281324/suppl/GSM281324.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281325 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD21
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281325
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281325/suppl/GSM281325.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281326 | GPL570 |
|
papillary renal cell cancer; pRCCa_HD95
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281326
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281326/suppl/GSM281326.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281327 | GPL570 |
|
papillary renal cell cancer; pRCCb_FR503
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281327
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281327/suppl/GSM281327.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281328 | GPL570 |
|
papillary renal cell cancer; pRCCb_HA393B
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281328
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281328/suppl/GSM281328.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281329 | GPL570 |
|
papillary renal cell cancer; pRCCb_HA454a
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281329
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281329/suppl/GSM281329.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281330 | GPL570 |
|
papillary renal cell cancer; pRCCb_HA454b
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281330
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281330/suppl/GSM281330.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281331 | GPL570 |
|
papillary renal cell cancer; pRCCb_HA456a
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281331
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281331/suppl/GSM281331.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281332 | GPL570 |
|
papillary renal cell cancer; pRCCb_HD11
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281332
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281332/suppl/GSM281332.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281333 | GPL570 |
|
papillary renal cell cancer; pRCCb_HD183
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281333
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281333/suppl/GSM281333.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281334 | GPL570 |
|
papillary renal cell cancer; pRCCb_HD38a
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281334
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281334/suppl/GSM281334.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281335 | GPL570 |
|
papillary renal cell cancer; pRCCb_HD38b
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281335
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281335/suppl/GSM281335.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281336 | GPL570 |
|
renal oncocytoma; RO_HD1175
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281336
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281336/suppl/GSM281336.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281337 | GPL570 |
|
renal oncocytoma; RO_HD171A
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281337
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281337/suppl/GSM281337.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281338 | GPL570 |
|
renal oncocytoma; RO_HD30
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281338
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281338/suppl/GSM281338.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281339 | GPL570 |
|
renal oncocytoma; RO_HD37
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281339
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281339/suppl/GSM281339.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281340 | GPL570 |
|
rhabdoid tumor of kidney; RhT_HD4
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281340
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281340/suppl/GSM281340.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281341 | GPL570 |
|
Wilms' tumor; WT_RK16
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281341
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281341/suppl/GSM281341.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281342 | GPL570 |
|
Wilms' tumor; WT_RK20
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281342
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281342/suppl/GSM281342.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281343 | GPL570 |
|
Wilms' tumor; WT_RK34
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281343
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281343/suppl/GSM281343.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
GSM281344 | GPL570 |
|
Wilms' tumor; WT_RK42
|
renal tissue
|
renal tumor
|
gene expression data for renal tumor
|
| Sample_geo_accession | GSM281344
| | Sample_status | Public on Sep 25 2008
| | Sample_submission_date | Apr 11 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Biopsy material was stored in liquid nitrogen until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281344/suppl/GSM281344.CEL.gz
| | Sample_series_id | GSE11151
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
