Search results for the GEO ID: GSE11165  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM281658 | GPL1261 |
|
wild-type #1
|
wild-type E18.5 mouse
|
wild-type E18.5
|
Comparison of GATA6 null tissue and wild type controls to determine the role GATA6 plays in lung development and regeneration.
|
| Sample_geo_accession | GSM281658
| | Sample_status | Public on Apr 15 2008
| | Sample_submission_date | Apr 14 2008
| | Sample_last_update_date | Apr 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | mouse embryonic lungs were isolated at E18.5 of development
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol using 5 micorgrams total RNA, Superscript II RT. Second strand synthesis and in vitro amplification and incorporation with biotynalted CTP and UTP.
| | Sample_hyb_protocol | The cRNA products were fragments to 200 bp or less, heated for 5 min (100-C) and hybridized for 16 hours at 45-C. Arrays washed at low and hi strigency and stained with streptavidin coupled with fuorscent marker.
| | Sample_scan_protocol | Confocal scanner used to collect fuorescence signal. The average signal from 2 sequential scans wa scalculated for each microarray feature.
| | Sample_data_processing | Affy cel files were processed using GC-RMA in Stratagene ArrayAssist Lite version 3.4, MAS5 flags were calculated simultaneously and both the gc-rma expession value and the MAS5 detection flag were included in the .chp files. Default paramters were used.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Edward,,Morrisey
| | Sample_contact_email | emorrise@mail.med.upenn.edu
| | Sample_contact_phone | 215-573-3010
| | Sample_contact_fax | 215-573-2094
| | Sample_contact_department | Medicine and Cell and Developmental Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 941 Curie Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281658/suppl/GSM281658.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281658/suppl/GSM281658.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281658/suppl/GSM281658.EXP.gz
| | Sample_series_id | GSE11165
| | Sample_data_row_count | 45101
| | |
|
GSM281659 | GPL1261 |
|
wild-type #2
|
wild-type E18.5 mouse
|
wild-type E18.5
|
Comparison of GATA6 null tissue and wild type controls to determine the role GATA6 plays in lung development and regeneration.
|
| Sample_geo_accession | GSM281659
| | Sample_status | Public on Apr 15 2008
| | Sample_submission_date | Apr 14 2008
| | Sample_last_update_date | Apr 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | mouse embryonic lungs were isolated at E18.5 of development
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol using 5 micorgrams total RNA, Superscript II RT. Second strand synthesis and in vitro amplification and incorporation with biotynalted CTP and UTP.
| | Sample_hyb_protocol | The cRNA products were fragments to 200 bp or less, heated for 5 min (100-C) and hybridized for 16 hours at 45-C. Arrays washed at low and hi strigency and stained with streptavidin coupled with fuorscent marker.
| | Sample_scan_protocol | Confocal scanner used to collect fuorescence signal. The average signal from 2 sequential scans wa scalculated for each microarray feature.
| | Sample_data_processing | Affy cel files were processed using GC-RMA in Stratagene ArrayAssist Lite version 3.4, MAS5 flags were calculated simultaneously and both the gc-rma expession value and the MAS5 detection flag were included in the .chp files. Default paramters were used.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Edward,,Morrisey
| | Sample_contact_email | emorrise@mail.med.upenn.edu
| | Sample_contact_phone | 215-573-3010
| | Sample_contact_fax | 215-573-2094
| | Sample_contact_department | Medicine and Cell and Developmental Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 941 Curie Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281659/suppl/GSM281659.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281659/suppl/GSM281659.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281659/suppl/GSM281659.EXP.gz
| | Sample_series_id | GSE11165
| | Sample_data_row_count | 45101
| | |
|
GSM281660 | GPL1261 |
|
wild-type #3
|
wild-type E18.5 mouse
|
wild-type E18.5
|
Comparison of GATA6 null tissue and wild type controls to determine the role GATA6 plays in lung development and regeneration.
|
| Sample_geo_accession | GSM281660
| | Sample_status | Public on Apr 15 2008
| | Sample_submission_date | Apr 14 2008
| | Sample_last_update_date | Apr 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | mouse embryonic lungs were isolated at E18.5 of development
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol using 5 micorgrams total RNA, Superscript II RT. Second strand synthesis and in vitro amplification and incorporation with biotynalted CTP and UTP.
| | Sample_hyb_protocol | The cRNA products were fragments to 200 bp or less, heated for 5 min (100-C) and hybridized for 16 hours at 45-C. Arrays washed at low and hi strigency and stained with streptavidin coupled with fuorscent marker.
| | Sample_scan_protocol | Confocal scanner used to collect fuorescence signal. The average signal from 2 sequential scans wa scalculated for each microarray feature.
| | Sample_data_processing | Affy cel files were processed using GC-RMA in Stratagene ArrayAssist Lite version 3.4, MAS5 flags were calculated simultaneously and both the gc-rma expession value and the MAS5 detection flag were included in the .chp files. Default paramters were used.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Edward,,Morrisey
| | Sample_contact_email | emorrise@mail.med.upenn.edu
| | Sample_contact_phone | 215-573-3010
| | Sample_contact_fax | 215-573-2094
| | Sample_contact_department | Medicine and Cell and Developmental Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 941 Curie Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281660/suppl/GSM281660.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281660/suppl/GSM281660.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281660/suppl/GSM281660.EXP.gz
| | Sample_series_id | GSE11165
| | Sample_data_row_count | 45101
| | |
|
GSM281661 | GPL1261 |
|
GATA6 KO #1
|
GATA6 KO lung E18.5 mouse
|
GATA6 KO lung E18.5 mixed strain
|
Comparison of GATA6 null tissue and wild type controls to determine the role GATA6 plays in lung development and regeneration.
|
| Sample_geo_accession | GSM281661
| | Sample_status | Public on Apr 15 2008
| | Sample_submission_date | Apr 14 2008
| | Sample_last_update_date | Apr 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | mouse embryonic lungs were isolated at E18.5 of development
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol using 5 micorgrams total RNA, Superscript II RT. Second strand synthesis and in vitro amplification and incorporation with biotynalted CTP and UTP.
| | Sample_hyb_protocol | The cRNA products were fragments to 200 bp or less, heated for 5 min (100-C) and hybridized for 16 hours at 45-C. Arrays washed at low and hi strigency and stained with streptavidin coupled with fuorscent marker.
| | Sample_scan_protocol | Confocal scanner used to collect fuorescence signal. The average signal from 2 sequential scans wa scalculated for each microarray feature.
| | Sample_data_processing | Affy cel files were processed using GC-RMA in Stratagene ArrayAssist Lite version 3.4, MAS5 flags were calculated simultaneously and both the gc-rma expession value and the MAS5 detection flag were included in the .chp files. Default paramters were used.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Edward,,Morrisey
| | Sample_contact_email | emorrise@mail.med.upenn.edu
| | Sample_contact_phone | 215-573-3010
| | Sample_contact_fax | 215-573-2094
| | Sample_contact_department | Medicine and Cell and Developmental Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 941 Curie Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281661/suppl/GSM281661.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281661/suppl/GSM281661.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281661/suppl/GSM281661.EXP.gz
| | Sample_series_id | GSE11165
| | Sample_data_row_count | 45101
| | |
|
GSM281662 | GPL1261 |
|
GATA6 KO #2
|
GATA6 KO lung E18.5 mouse
|
GATA6 KO lung E18.5 mixed strain
|
Comparison of GATA6 null tissue and wild type controls to determine the role GATA6 plays in lung development and regeneration.
|
| Sample_geo_accession | GSM281662
| | Sample_status | Public on Apr 15 2008
| | Sample_submission_date | Apr 14 2008
| | Sample_last_update_date | Apr 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | mouse embryonic lungs were isolated at E18.5 of development
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol using 5 micorgrams total RNA, Superscript II RT. Second strand synthesis and in vitro amplification and incorporation with biotynalted CTP and UTP.
| | Sample_hyb_protocol | The cRNA products were fragments to 200 bp or less, heated for 5 min (100-C) and hybridized for 16 hours at 45-C. Arrays washed at low and hi strigency and stained with streptavidin coupled with fuorscent marker.
| | Sample_scan_protocol | Confocal scanner used to collect fuorescence signal. The average signal from 2 sequential scans wa scalculated for each microarray feature.
| | Sample_data_processing | Affy cel files were processed using GC-RMA in Stratagene ArrayAssist Lite version 3.4, MAS5 flags were calculated simultaneously and both the gc-rma expession value and the MAS5 detection flag were included in the .chp files. Default paramters were used.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Edward,,Morrisey
| | Sample_contact_email | emorrise@mail.med.upenn.edu
| | Sample_contact_phone | 215-573-3010
| | Sample_contact_fax | 215-573-2094
| | Sample_contact_department | Medicine and Cell and Developmental Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 941 Curie Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281662/suppl/GSM281662.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281662/suppl/GSM281662.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281662/suppl/GSM281662.EXP.gz
| | Sample_series_id | GSE11165
| | Sample_data_row_count | 45101
| | |
|
GSM281663 | GPL1261 |
|
GATA6 KO #3
|
GATA6 KO lung E18.5 mouse
|
GATA6 KO lung E18.5 mixed strain
|
Comparison of GATA6 null mouse tissue and wild type controls to determine the role GATA6 plays in lung development and regeneration.
|
| Sample_geo_accession | GSM281663
| | Sample_status | Public on Apr 15 2008
| | Sample_submission_date | Apr 14 2008
| | Sample_last_update_date | Apr 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | mouse embryonic lungs were isolated at E18.5 of development
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol using 5 micorgrams total RNA, Superscript II RT. Second strand synthesis and in vitro amplification and incorporation with biotynalted CTP and UTP.
| | Sample_hyb_protocol | The cRNA products were fragments to 200 bp or less, heated for 5 min (100-C) and hybridized for 16 hours at 45-C. Arrays washed at low and hi strigency and stained with streptavidin coupled with fuorscent marker.
| | Sample_scan_protocol | Confocal scanner used to collect fuorescence signal. The average signal from 2 sequential scans wa scalculated for each microarray feature.
| | Sample_data_processing | Affy cel files were processed using GC-RMA in Stratagene ArrayAssist Lite version 3.4, MAS5 flags were calculated simultaneously and both the gc-rma expession value and the MAS5 detection flag were included in the .chp files. Default paramters were used.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Edward,,Morrisey
| | Sample_contact_email | emorrise@mail.med.upenn.edu
| | Sample_contact_phone | 215-573-3010
| | Sample_contact_fax | 215-573-2094
| | Sample_contact_department | Medicine and Cell and Developmental Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 941 Curie Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281663/suppl/GSM281663.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281663/suppl/GSM281663.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM281nnn/GSM281663/suppl/GSM281663.EXP.gz
| | Sample_series_id | GSE11165
| | Sample_data_row_count | 45101
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