Search results for the GEO ID: GSE11253  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM284094 | GPL1261 |
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Wild Type 1
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Wild Type HSCs (KLS cells)
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genotype: Rb +/+ p130 +/+ p107+/-
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Gene expression from FACS sorted KLS cells
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| Sample_geo_accession | GSM284094
| | Sample_status | Public on Apr 25 2008
| | Sample_submission_date | Apr 24 2008
| | Sample_last_update_date | Apr 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | Recombination was activated in 6 weeks old mice (Mx1Cre inducible system). KLS cells were FACS sorted 2 months after the recombination.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extractions on Total RNA was performed according to the manufacturer instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Genechips were scanned according to the manufacturer protocol.
| | Sample_data_processing | Data were analyzed using R (cran.r-project.org) and Bioconductor (www.bioconductor.org) software. Background correction, normalization and calculation of gene expression values by model-fitting was performed using the Robust Multiarray Average procedure.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Viatour
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 350 pasteur drive
| | Sample_contact_city | palo alto
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94306
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM284nnn/GSM284094/suppl/GSM284094.CEL.gz
| | Sample_series_id | GSE11253
| | Sample_data_row_count | 45101
| | |
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GSM284095 | GPL1261 |
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Wild Type 2
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Wild Type HSCs (KLS cells)
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genotype: Rb +/+ p130 +/+ p107+/-
|
Gene expression from FACS sorted KLS cells
|
| Sample_geo_accession | GSM284095
| | Sample_status | Public on Apr 25 2008
| | Sample_submission_date | Apr 24 2008
| | Sample_last_update_date | Apr 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | Recombination was activated in 6 weeks old mice (Mx1Cre inducible system). KLS cells were FACS sorted 2 months after the recombination.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extractions on Total RNA was performed according to the manufacturer instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Genechips were scanned according to the manufacturer protocol.
| | Sample_data_processing | Data were analyzed using R (cran.r-project.org) and Bioconductor (www.bioconductor.org) software. Background correction, normalization and calculation of gene expression values by model-fitting was performed using the Robust Multiarray Average procedure.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Viatour
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 350 pasteur drive
| | Sample_contact_city | palo alto
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94306
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM284nnn/GSM284095/suppl/GSM284095.CEL.gz
| | Sample_series_id | GSE11253
| | Sample_data_row_count | 45101
| | |
|
GSM284096 | GPL1261 |
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Rb family deficient 1
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Rb family deficient HSCs (KLS cells)
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genotype: Rb -/- p130 -/- p107-/-
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Gene expression from FACS sorted KLS cells
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| Sample_geo_accession | GSM284096
| | Sample_status | Public on Apr 25 2008
| | Sample_submission_date | Apr 24 2008
| | Sample_last_update_date | Apr 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | Recombination was activated in 6 weeks old mice (Mx1Cre inducible system). KLS cells were FACS sorted 2 months after the recombination.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extractions on Total RNA was performed according to the manufacturer instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Genechips were scanned according to the manufacturer protocol.
| | Sample_data_processing | Data were analyzed using R (cran.r-project.org) and Bioconductor (www.bioconductor.org) software. Background correction, normalization and calculation of gene expression values by model-fitting was performed using the Robust Multiarray Average procedure.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Viatour
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 350 pasteur drive
| | Sample_contact_city | palo alto
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94306
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM284nnn/GSM284096/suppl/GSM284096.CEL.gz
| | Sample_series_id | GSE11253
| | Sample_data_row_count | 45101
| | |
|
GSM284097 | GPL1261 |
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Rb family deficient 2
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Rb family deficient HSCs (KLS cells)
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genotype: Rb -/- p130 -/- p107-/-
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Gene expression from FACS sorted KLS cells
|
| Sample_geo_accession | GSM284097
| | Sample_status | Public on Apr 25 2008
| | Sample_submission_date | Apr 24 2008
| | Sample_last_update_date | Apr 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | Recombination was activated in 6 weeks old mice (Mx1Cre inducible system). KLS cells were FACS sorted 2 months after the recombination.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extractions on Total RNA was performed according to the manufacturer instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Genechips were scanned according to the manufacturer protocol.
| | Sample_data_processing | Data were analyzed using R (cran.r-project.org) and Bioconductor (www.bioconductor.org) software. Background correction, normalization and calculation of gene expression values by model-fitting was performed using the Robust Multiarray Average procedure.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Viatour
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 350 pasteur drive
| | Sample_contact_city | palo alto
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94306
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM284nnn/GSM284097/suppl/GSM284097.CEL.gz
| | Sample_series_id | GSE11253
| | Sample_data_row_count | 45101
| | |
|
GSM284098 | GPL1261 |
|
Rb family deficient 3
|
Rb family deficient HSCs (KLS cells)
|
genotype: Rb -/- p130 -/- p107-/-
|
Gene expression from FACS sorted KLS cells
|
| Sample_geo_accession | GSM284098
| | Sample_status | Public on Apr 25 2008
| | Sample_submission_date | Apr 24 2008
| | Sample_last_update_date | Apr 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | Recombination was activated in 6 weeks old mice (Mx1Cre inducible system). KLS cells were FACS sorted 2 months after the recombination.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extractions on Total RNA was performed according to the manufacturer instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Genechips were scanned according to the manufacturer protocol.
| | Sample_data_processing | Data were analyzed using R (cran.r-project.org) and Bioconductor (www.bioconductor.org) software. Background correction, normalization and calculation of gene expression values by model-fitting was performed using the Robust Multiarray Average procedure.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Patrick,,Viatour
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 350 pasteur drive
| | Sample_contact_city | palo alto
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94306
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM284nnn/GSM284098/suppl/GSM284098.CEL.gz
| | Sample_series_id | GSE11253
| | Sample_data_row_count | 45101
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