Search results for the GEO ID: GSE11352  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM286756 | GPL570 |
|
12hr timepoint - Untreated control - biological rep1
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286756
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286756/suppl/GSM286756.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286757 | GPL570 |
|
12hr timepoint - Untreated control - biological rep2
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286757
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286757/suppl/GSM286757.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286758 | GPL570 |
|
12hr timepoint - Untreated control - biological rep3
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286758
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286758/suppl/GSM286758.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286759 | GPL570 |
|
12hr timepoint - E2 treated - biological rep1
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286759
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286759/suppl/GSM286759.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286760 | GPL570 |
|
12hr timepoint - E2 treated - biological rep2
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286760
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286760/suppl/GSM286760.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286761 | GPL570 |
|
12hr timepoint - E2 treated - biological rep3
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286761
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286761/suppl/GSM286761.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286762 | GPL570 |
|
24hr timepoint - Untreated control - biological rep1
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286762
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286762/suppl/GSM286762.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286763 | GPL570 |
|
24hr timepoint - Untreated control - biological rep2
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286763
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286763/suppl/GSM286763.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286764 | GPL570 |
|
24hr timepoint - Untreated control - biological rep3
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286764
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286764/suppl/GSM286764.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286765 | GPL570 |
|
24hr timepoint - E2 treated - biological rep1
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286765
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286765/suppl/GSM286765.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286766 | GPL570 |
|
24hr timepoint - E2 treated - biological rep2
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286766
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286766/suppl/GSM286766.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286767 | GPL570 |
|
24hr timepoint - E2 treated - biological rep3
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286767
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286767/suppl/GSM286767.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286768 | GPL570 |
|
48hr timepoint - Untreated control - biological rep1
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286768
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286768/suppl/GSM286768.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286769 | GPL570 |
|
48hr timepoint - Untreated control - biological rep2
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286769
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286769/suppl/GSM286769.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286770 | GPL570 |
|
48hr timepoint - Untreated control - biological rep3
|
5 micrograms MCF7 total RNA
|
untreated control
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286770
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286770/suppl/GSM286770.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286771 | GPL570 |
|
48hr timepoint - E2 treated - biological rep1
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286771
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286771/suppl/GSM286771.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286772 | GPL570 |
|
48hr timepoint - E2 treated - biological rep2
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286772
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286772/suppl/GSM286772.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
GSM286773 | GPL570 |
|
48hr timepoint - E2 treated - biological rep3
|
5 micrograms MCF7 total RNA
|
E2 treated
|
E2 treated or untreated (control) cells.
|
| Sample_geo_accession | GSM286773
| | Sample_status | Public on May 07 2008
| | Sample_submission_date | May 06 2008
| | Sample_last_update_date | May 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7 cells were grown to 30-50% confluency and exposed to 10 nM E2 (or vehicle only) at 12, 24, and 48 hours. Each timepoint was performed in triplicate (ie, biological replicates).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified using the Qiagen RNAeasy kit according to the manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lance,David,Miller
| | Sample_contact_email | millerl@gis.a-star.edu.sg
| | Sample_contact_phone | 65 6478 8100
| | Sample_contact_fax | 65 6478 9060
| | Sample_contact_department | Microarray and Expression Genomics
| | Sample_contact_institute | Genome Institute of Singapore
| | Sample_contact_address | 60 Bioplois Street, #02-01 Genome
| | Sample_contact_city | Singapore
| | Sample_contact_zip/postal_code | 138672
| | Sample_contact_country | Singapore
| | Sample_contact_web_link | http://www.gis.a-star.edu.sg/internet/site/investigators.php?f=cv&user_id=7
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM286nnn/GSM286773/suppl/GSM286773.CEL.gz
| | Sample_series_id | GSE11352
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
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