Search results for the GEO ID: GSE11373  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM287274 | GPL570 |
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PSC, vector control, biological rep1
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blank vector control
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esophageal squamous cell carcinoma
Fascin high expression
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expression genes data from PSC (blank vector control)
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| Sample_geo_accession | GSM287274
| | Sample_status | Public on May 08 2008
| | Sample_submission_date | May 07 2008
| | Sample_last_update_date | May 07 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cell lines were maintained in 199 medium(Invitrogen) containing 10% fetal calf serum (FCS)at 5% CO2 at 37℃
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Enmin,,Li
| | Sample_contact_email | nmli@stu.edu.cn
| | Sample_contact_phone | 86-754-8900847
| | Sample_contact_fax | 86-754-8900247
| | Sample_contact_institute | Shantou university, medical college
| | Sample_contact_address | 22 Xinling Road
| | Sample_contact_city | shantou
| | Sample_contact_state | guangdong
| | Sample_contact_zip/postal_code | 515041
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287274/suppl/GSM287274.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287274/suppl/GSM287274.EXP.gz
| | Sample_series_id | GSE11373
| | Sample_data_row_count | 54613
| | |
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GSM287275 | GPL570 |
|
PSF8, Fascin-knockdown, biological rep1
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Fascin-knockdown
|
esophageal squamous cell carcinoma
Fascin-knockdown
|
expression genes data from PSF8 (Fascin-knockdown cells)
|
| Sample_geo_accession | GSM287275
| | Sample_status | Public on May 08 2008
| | Sample_submission_date | May 07 2008
| | Sample_last_update_date | Aug 07 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | cell lines were maintained in 199 medium(Invitrogen) containing 10% fetal calf serum (FCS)at 5% CO2 at 37℃
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Enmin,,Li
| | Sample_contact_email | nmli@stu.edu.cn
| | Sample_contact_phone | 86-754-8900847
| | Sample_contact_fax | 86-754-8900247
| | Sample_contact_institute | Shantou university, medical college
| | Sample_contact_address | 22 Xinling Road
| | Sample_contact_city | shantou
| | Sample_contact_state | guangdong
| | Sample_contact_zip/postal_code | 515041
| | Sample_contact_country | China
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287275/suppl/GSM287275.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287275/suppl/GSM287275.EXP.gz
| | Sample_series_id | GSE11373
| | Sample_data_row_count | 54613
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