Search results for the GEO ID: GSE11382  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM287531 | GPL1261 |
|
Control liver, biological rep 1
|
Female mouse liver, 40 wk, control
|
C3H/HeN, female
|
Gene expression data from control 40 wk old female mouse liver
|
| Sample_geo_accession | GSM287531
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287531/suppl/GSM287531.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287531/suppl/GSM287531.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287532 | GPL1261 |
|
Control liver, biological rep 2
|
Female mouse liver, 40 wk, control
|
C3H/HeN, female
|
Gene expression data from control 40 wk old female mouse liver
|
| Sample_geo_accession | GSM287532
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287532/suppl/GSM287532.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287532/suppl/GSM287532.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287533 | GPL1261 |
|
AFB1 liver, biological rep 1
|
Female mouse liver, 40 wk, AFB1 inoculated
|
C3H/HeN, female
|
Gene expression data from AFB1-treated 40 wk old female mouse liver
|
| Sample_geo_accession | GSM287533
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287533/suppl/GSM287533.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287533/suppl/GSM287533.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287534 | GPL1261 |
|
AFB1 liver, biological rep 2
|
Female mouse liver, 40 wk, AFB1 inoculated
|
C3H/HeN, female
|
Gene expression data from AFB1-treated 40 wk old female mouse liver
|
| Sample_geo_accession | GSM287534
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287534/suppl/GSM287534.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287534/suppl/GSM287534.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287535 | GPL1261 |
|
AFB1+H. hepaticus liver, biological rep 1
|
Female mouse liver, 40 wk, AFB1 & H. hepaticus inoculated
|
C3H/HeN, female
|
Gene expression data from AFB1+H. hepaticus-treated 40 wk old female mouse liver
|
| Sample_geo_accession | GSM287535
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287535/suppl/GSM287535.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287535/suppl/GSM287535.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287536 | GPL1261 |
|
AFB1+H. hepaticus liver, biological rep 2
|
Female mouse liver, 40 wk, AFB1 & H. hepaticus inoculated
|
C3H/HeN, female
|
Gene expression data from AFB1+H. hepaticus-treated 40 wk old female mouse liver
|
| Sample_geo_accession | GSM287536
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287536/suppl/GSM287536.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287536/suppl/GSM287536.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287537 | GPL1261 |
|
Control cecum, biological rep 1
|
Female mouse cecum, 40 wk, control
|
C3H/HeN, female
|
Gene expression data from control 40 wk old female mouse cecum
|
| Sample_geo_accession | GSM287537
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287537/suppl/GSM287537.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287537/suppl/GSM287537.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287538 | GPL1261 |
|
Control cecum, biological rep 2
|
Female mouse cecum, 40 wk, control
|
C3H/HeN, female
|
Gene expression data from control 40 wk old female mouse cecum
|
| Sample_geo_accession | GSM287538
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287538/suppl/GSM287538.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287538/suppl/GSM287538.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287539 | GPL1261 |
|
AFB1+H. hepaticus cecum, biological rep 1
|
Female mouse cecum, 40 wk, AFB1 & H. hepaticus inoculated
|
C3H/HeN, female
|
Gene expression data from AFB1+H. hepaticus-treated 40 wk old female mouse cecum
|
| Sample_geo_accession | GSM287539
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287539/suppl/GSM287539.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287539/suppl/GSM287539.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
| | |
|
GSM287540 | GPL1261 |
|
AFB1+H. hepaticus cecum, biological rep 2
|
Female mouse cecum, 40 wk, AFB1 & H. hepaticus inoculated
|
C3H/HeN, female
|
Gene expression data from AFB1+H. hepaticus-treated 40 wk old female mouse cecum
|
| Sample_geo_accession | GSM287540
| | Sample_status | Public on May 09 2008
| | Sample_submission_date | May 08 2008
| | Sample_last_update_date | May 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Liver and cecum samples were removed and flash frozen in liquid N2 at necropsy
| | Sample_growth_protocol_ch1 | C3H/HeN mice were inoculated with AFB1 and/or H. hepaticus or vehicle only as described above, and collected at 40 weeks
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from freshly thawed tissues using Trizol according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ng total RNA
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Arlin,B,Rogers
| | Sample_contact_email | abr@med.unc.edu
| | Sample_contact_phone | 919-843-8088
| | Sample_contact_fax | 919-966-7911
| | Sample_contact_department | Lineberger Comprehensive Cancer Center
| | Sample_contact_institute | University of North Carolina
| | Sample_contact_address | Campus Box 7431
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599-7431
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://cancer.unc.edu/research/faculty/displayMember.asp?ID=602
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287540/suppl/GSM287540.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM287nnn/GSM287540/suppl/GSM287540.CHP.gz
| | Sample_series_id | GSE11382
| | Sample_data_row_count | 45101
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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