Search results for the GEO ID: GSE11418  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM288223 | GPL570 |
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NHDF at passage 4, from adult donor, biological rep 1
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NHDF in culture
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Fibroblast cells
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Gene expression data from NHDF in culture
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| Sample_geo_accession | GSM288223
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288223/suppl/GSM288223.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
| | |
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GSM288224 | GPL570 |
|
NHDF at passage 4, from adult donor, biological rep 2
|
NHDF in culture
|
Fibroblast cells
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Gene expression data from NHDF in culture
|
| Sample_geo_accession | GSM288224
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288224/suppl/GSM288224.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
| | |
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GSM288225 | GPL570 |
|
NHDF at passage 13, from adult donor, biological rep 1
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NHDF in culture
|
Fibroblast cells
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Gene expression data from NHDF in culture
|
| Sample_geo_accession | GSM288225
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288225/suppl/GSM288225.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
| | |
|
GSM288226 | GPL570 |
|
NHDF at passage 13, from adult donor, biological rep 2
|
NHDF in culture
|
Fibroblast cells
|
Gene expression data from NHDF in culture
|
| Sample_geo_accession | GSM288226
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288226/suppl/GSM288226.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
| | |
|
GSM288227 | GPL570 |
|
NHDF at passage 13, from adult donor, biological rep 3
|
NHDF in culture
|
Fibroblast cells
|
Gene expression data from NHDF in culture
|
| Sample_geo_accession | GSM288227
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288227/suppl/GSM288227.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
| | |
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GSM288228 | GPL570 |
|
NHDF at passage 6, from neonatal donor, biological rep 1
|
NHDF in culture
|
Fibroblast cells
|
Gene expression data from NHDF in culture
|
| Sample_geo_accession | GSM288228
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288228/suppl/GSM288228.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
| | |
|
GSM288229 | GPL570 |
|
NHDF at passage 6, from neonatal donor, biological rep 2
|
NHDF in culture
|
Fibroblast cells
|
Gene expression data from NHDF in culture
|
| Sample_geo_accession | GSM288229
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288229/suppl/GSM288229.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
| | |
|
GSM288230 | GPL570 |
|
NHDF at passage 6, from neonatal donor, biological rep 3
|
NHDF in culture
|
Fibroblast cells
|
Gene expression data from NHDF in culture
|
| Sample_geo_accession | GSM288230
| | Sample_status | Public on May 13 2008
| | Sample_submission_date | May 12 2008
| | Sample_last_update_date | May 12 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Cells were cultured to various passage and harvested for RNA isolation.
| | Sample_growth_protocol_ch1 | Normal human dermal fibroblasts (NHDFs) were maintained in FGM with 10% FBS, 5% CO2 and at 37 oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions followed by RNA clean up using RNeasy spin columns.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C and 60 rpm on human whole genome U133 plus 2 GeneChip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | Chip processing, image capturing, and raw data analysis were performed using the Affymetrix Microarray Suite MAS adopting default parameters. The chip signals were normalized using the default method in Affymetrix MAS5, but setting the target at 2%-trimmed mean to 1500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tao,,Wei
| | Sample_contact_email | weita@lilly.com
| | Sample_contact_phone | 317-651-9917
| | Sample_contact_institute | Eli Lilly and Company
| | Sample_contact_address | Lilly Corporate Center
| | Sample_contact_city | Indianapolis
| | Sample_contact_zip/postal_code | 46285
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288230/suppl/GSM288230.CEL.gz
| | Sample_series_id | GSE11418
| | Sample_data_row_count | 54675
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