Search results for the GEO ID: GSE11419 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM288232 | GPL1261 |
|
Transgenic mice #1
|
Hippocampus
|
Glud1 Tg, C57BL/6 background, 9-month-old
|
total RNA extracted from homogenized hippocampus
|
Sample_geo_accession | GSM288232
| Sample_status | Public on Jul 12 2010
| Sample_submission_date | May 12 2008
| Sample_last_update_date | Jul 12 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | one-cycle target labeling
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol
| Sample_data_processing | Affymetrix MAS 5.0 default processing, all chips scaled to the same target value of 500.
| Sample_platform_id | GPL1261
| Sample_contact_name | Xinkun,,Wang
| Sample_contact_email | xwang@ku.edu
| Sample_contact_phone | 785-864-4589
| Sample_contact_department | Genomics Facility
| Sample_contact_institute | The University of Kansas
| Sample_contact_address | 2099 Constant Ave
| Sample_contact_city | Lawrence
| Sample_contact_state | KS
| Sample_contact_zip/postal_code | 66047
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288232/suppl/GSM288232.CEL.gz
| Sample_series_id | GSE11419
| Sample_data_row_count | 45101
| |
|
GSM288233 | GPL1261 |
|
Transgenic mice #2
|
Hippocampus
|
Glud1 Tg, C57BL/6 background, 9-month-old
|
total RNA extracted from homogenized hippocampus
|
Sample_geo_accession | GSM288233
| Sample_status | Public on Jul 12 2010
| Sample_submission_date | May 12 2008
| Sample_last_update_date | Jul 12 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | one-cycle target labeling
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol
| Sample_data_processing | Affymetrix MAS 5.0 default processing, all chips scaled to the same target value of 500.
| Sample_platform_id | GPL1261
| Sample_contact_name | Xinkun,,Wang
| Sample_contact_email | xwang@ku.edu
| Sample_contact_phone | 785-864-4589
| Sample_contact_department | Genomics Facility
| Sample_contact_institute | The University of Kansas
| Sample_contact_address | 2099 Constant Ave
| Sample_contact_city | Lawrence
| Sample_contact_state | KS
| Sample_contact_zip/postal_code | 66047
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288233/suppl/GSM288233.CEL.gz
| Sample_series_id | GSE11419
| Sample_data_row_count | 45101
| |
|
GSM288234 | GPL1261 |
|
Transgenic mice #3
|
Hippocampus
|
Glud1 Tg, C57BL/6 background, 9-month-old
|
total RNA extracted from homogenized hippocampus
|
Sample_geo_accession | GSM288234
| Sample_status | Public on Jul 12 2010
| Sample_submission_date | May 12 2008
| Sample_last_update_date | Jul 12 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | one-cycle target labeling
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol
| Sample_data_processing | Affymetrix MAS 5.0 default processing, all chips scaled to the same target value of 500.
| Sample_platform_id | GPL1261
| Sample_contact_name | Xinkun,,Wang
| Sample_contact_email | xwang@ku.edu
| Sample_contact_phone | 785-864-4589
| Sample_contact_department | Genomics Facility
| Sample_contact_institute | The University of Kansas
| Sample_contact_address | 2099 Constant Ave
| Sample_contact_city | Lawrence
| Sample_contact_state | KS
| Sample_contact_zip/postal_code | 66047
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288234/suppl/GSM288234.CEL.gz
| Sample_series_id | GSE11419
| Sample_data_row_count | 45101
| |
|
GSM288235 | GPL1261 |
|
Wild type mice #1
|
Hippocampus
|
Wild type C57BL/6, 9-month-old
|
total RNA extracted from homogenized hippocampus
|
Sample_geo_accession | GSM288235
| Sample_status | Public on Jul 12 2010
| Sample_submission_date | May 12 2008
| Sample_last_update_date | Jul 12 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | one-cycle target labeling
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol
| Sample_data_processing | Affymetrix MAS 5.0 default processing, all chips scaled to the same target value of 500.
| Sample_platform_id | GPL1261
| Sample_contact_name | Xinkun,,Wang
| Sample_contact_email | xwang@ku.edu
| Sample_contact_phone | 785-864-4589
| Sample_contact_department | Genomics Facility
| Sample_contact_institute | The University of Kansas
| Sample_contact_address | 2099 Constant Ave
| Sample_contact_city | Lawrence
| Sample_contact_state | KS
| Sample_contact_zip/postal_code | 66047
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288235/suppl/GSM288235.CEL.gz
| Sample_series_id | GSE11419
| Sample_data_row_count | 45101
| |
|
GSM288236 | GPL1261 |
|
Wild type mice #2
|
Hippocampus
|
Wild type C57BL/6, 9-month-old
|
total RNA extracted from homogenized hippocampus
|
Sample_geo_accession | GSM288236
| Sample_status | Public on Jul 12 2010
| Sample_submission_date | May 12 2008
| Sample_last_update_date | Jul 12 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | one-cycle target labeling
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol
| Sample_data_processing | Affymetrix MAS 5.0 default processing, all chips scaled to the same target value of 500.
| Sample_platform_id | GPL1261
| Sample_contact_name | Xinkun,,Wang
| Sample_contact_email | xwang@ku.edu
| Sample_contact_phone | 785-864-4589
| Sample_contact_department | Genomics Facility
| Sample_contact_institute | The University of Kansas
| Sample_contact_address | 2099 Constant Ave
| Sample_contact_city | Lawrence
| Sample_contact_state | KS
| Sample_contact_zip/postal_code | 66047
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288236/suppl/GSM288236.CEL.gz
| Sample_series_id | GSE11419
| Sample_data_row_count | 45101
| |
|
GSM288237 | GPL1261 |
|
Wild type mice #3
|
Hippocampus
|
Wild type C57BL/6, 9-month-old
|
total RNA extracted from homogenized hippocampus
|
Sample_geo_accession | GSM288237
| Sample_status | Public on Jul 12 2010
| Sample_submission_date | May 12 2008
| Sample_last_update_date | Jul 12 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment
| Sample_growth_protocol_ch1 | n/a
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | one-cycle target labeling
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol
| Sample_data_processing | Affymetrix MAS 5.0 default processing, all chips scaled to the same target value of 500.
| Sample_platform_id | GPL1261
| Sample_contact_name | Xinkun,,Wang
| Sample_contact_email | xwang@ku.edu
| Sample_contact_phone | 785-864-4589
| Sample_contact_department | Genomics Facility
| Sample_contact_institute | The University of Kansas
| Sample_contact_address | 2099 Constant Ave
| Sample_contact_city | Lawrence
| Sample_contact_state | KS
| Sample_contact_zip/postal_code | 66047
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288237/suppl/GSM288237.CEL.gz
| Sample_series_id | GSE11419
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|