Search results for the GEO ID: GSE11434 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM288398 | GPL1261 |
|
HVT1
|
Lung tissue following 3h high tidal volume mechanical ventilation
|
C57BL\6 male mice, 22-25g, lung tissue (30mg).
|
NA
|
Sample_geo_accession | GSM288398
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288398/suppl/GSM288398.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288398/suppl/GSM288398.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288399 | GPL1261 |
|
HVT2
|
Lung tissue after mechanical ventilation for 3h
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) after 3h high tidal volume ventilation
|
NA
|
Sample_geo_accession | GSM288399
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288399/suppl/GSM288399.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288399/suppl/GSM288399.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288400 | GPL1261 |
|
HVT3
|
Lung tissue after mechanical ventilation for 3h
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) after 3h high tidal volume ventilation
|
NA
|
Sample_geo_accession | GSM288400
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288400/suppl/GSM288400.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288400/suppl/GSM288400.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288401 | GPL1261 |
|
HVT4
|
Lung tissue after mechanical ventilation for 3h
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) after 3h high tidal volume ventilation
|
NA
|
Sample_geo_accession | GSM288401
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288401/suppl/GSM288401.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288401/suppl/GSM288401.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288402 | GPL1261 |
|
HVT5
|
Lung tissue after mechanical ventilation for 3h
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) after 3h high tidal volume ventilation
|
NA
|
Sample_geo_accession | GSM288402
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288402/suppl/GSM288402.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288402/suppl/GSM288402.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288403 | GPL1261 |
|
NV1
|
Lung tissue, no mechanical ventilation
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) no mechanical ventilation
|
NA
|
Sample_geo_accession | GSM288403
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288403/suppl/GSM288403.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288403/suppl/GSM288403.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288404 | GPL1261 |
|
NV2
|
Lung tissue, no mechanical ventilation
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) No mechanical ventilation
|
NA
|
Sample_geo_accession | GSM288404
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288404/suppl/GSM288404.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288404/suppl/GSM288404.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288405 | GPL1261 |
|
NV3
|
Lung tissue, no mechanical ventilation
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) No mechanical ventilation
|
NA
|
Sample_geo_accession | GSM288405
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288405/suppl/GSM288405.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288405/suppl/GSM288405.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288406 | GPL1261 |
|
NV4
|
Lung tissue, no mechanical ventilation
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) No mechanical ventilation
|
NA
|
Sample_geo_accession | GSM288406
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288406/suppl/GSM288406.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288406/suppl/GSM288406.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
GSM288407 | GPL1261 |
|
NV5
|
Lung tissue, no mechanical ventilation
|
C57BL\6 male mice, 22-25g lung tissue (30 mg) No mechanical ventilation
|
NA
|
Sample_geo_accession | GSM288407
| Sample_status | Public on May 15 2008
| Sample_submission_date | May 13 2008
| Sample_last_update_date | May 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice were anesthetized with isoflurane followed by ketamine/xylaxine. Saline (0.25 ml) was given every hour ip. A tracheotomy tube was placed and the mice were ventilated with an initial peak airway pressure of 20 cmH2O approximating a tidal volume of 20 ml/kg and without end-expiratory pressure. Ventilation was continued for 3h. Tidal volume was not adjusted. Body temperature was monitored with a digital rectal thermometer and maintained at 37C with a heating table and external heating lamp. Control mice were treated identically, but were not mechanically ventilated (i.e. breathed spontaneously).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy (Qiagen) from whole lung tissue (30 mg) stabilized in RNALater
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Single round aRNA sythesis followed by in vitro transcription (Ambion MessageAmp II-Biotin Enhanced)
| Sample_hyb_protocol | Standard Affymetrix Procedures
| Sample_scan_protocol | Standard Affymetrix Procedures
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | James,A,Frank
| Sample_contact_institute | UCSF
| Sample_contact_address | 4150 Clement St
| Sample_contact_city | San Francisco
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94121
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288407/suppl/GSM288407.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288407/suppl/GSM288407.CHP.gz
| Sample_series_id | GSE11434
| Sample_data_row_count | 45101
| |
|
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