Search results for the GEO ID: GSE11467  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM288961 | GPL96 |
|
Control 1
|
MCF-7 Cells
|
Breast cancer cell line
|
none
|
| Sample_geo_accession | GSM288961
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288961/suppl/GSM288961.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288961/suppl/GSM288961.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288962 | GPL96 |
|
Control 2
|
MCF-7
|
Human breast cancer cell line
|
none
|
| Sample_geo_accession | GSM288962
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288962/suppl/GSM288962.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288962/suppl/GSM288962.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288963 | GPL96 |
|
Control 3
|
MCF-7 cells
|
Human breast cancer cell line
|
none
|
| Sample_geo_accession | GSM288963
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288963/suppl/GSM288963.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288963/suppl/GSM288963.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288964 | GPL96 |
|
Estradiol 1
|
MCF-7 cells
|
Human breast cancer cell line, treated with 10 nM estradiol for 2 hours
|
none
|
| Sample_geo_accession | GSM288964
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288964/suppl/GSM288964.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288964/suppl/GSM288964.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288965 | GPL96 |
|
Estradiol 2
|
MCF-7 Cells
|
Human breast cancer cell line treated with 10 nM estradiol for 2h
|
none
|
| Sample_geo_accession | GSM288965
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288965/suppl/GSM288965.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288965/suppl/GSM288965.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288966 | GPL96 |
|
Estradiol 3
|
MCF-7
|
Human breast cancer cell line treated with 10 nM estradiol for 2h
|
none
|
| Sample_geo_accession | GSM288966
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288966/suppl/GSM288966.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288966/suppl/GSM288966.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288967 | GPL96 |
|
TNFa 1
|
MCF-7 Cells
|
Human breast cancer cell line treated with 10 ng/ml TNFa for 2h
|
none
|
| Sample_geo_accession | GSM288967
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288967/suppl/GSM288967.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288967/suppl/GSM288967.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288968 | GPL96 |
|
TNFa 2
|
MCF-7
|
Human breast cancer cell line treated with 10 ng/ml TNFa for 2h
|
none
|
| Sample_geo_accession | GSM288968
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288968/suppl/GSM288968.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288968/suppl/GSM288968.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288969 | GPL96 |
|
TNFa 3
|
MCF-7 Cells
|
Human breast cancer cell line treated with 10 ng/ml TNFa for 2h
|
none
|
| Sample_geo_accession | GSM288969
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288969/suppl/GSM288969.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288969/suppl/GSM288969.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288970 | GPL96 |
|
E2+TNFa 1
|
MCF-7
|
Human breast cancer cell line treated with 10 nM E2 + 10 ng/ml TNFa for 2h
|
none
|
| Sample_geo_accession | GSM288970
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288970/suppl/GSM288970.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288970/suppl/GSM288970.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
|
GSM288979 | GPL96 |
|
E2+TNFa 2
|
MCF-7
|
Human breast cancer cell line treated with 10 nM E2 + 10 ng/ml TNFa for 2h
|
none
|
| Sample_geo_accession | GSM288979
| | Sample_status | Public on Dec 01 2008
| | Sample_submission_date | May 15 2008
| | Sample_last_update_date | May 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol followed by RNAeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChIP IVT labeling kit
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed in S-Plus 6.2 statistical package with the S+ArrayAnalyzer v2.0.1 from Insightful. Hybridization signal intensities were normalized by quantiles and summarized using the Robust Multi-array Average (RMA) (Irizarry et al. 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Jonna,,Frasor
| | Sample_contact_email | jfrasor@uic.edu
| | Sample_contact_institute | University of Illinois at Chicago
| | Sample_contact_address | 835 S. Wolcott MC 901
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60612
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288979/suppl/GSM288979.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM288nnn/GSM288979/suppl/GSM288979.CHP.gz
| | Sample_series_id | GSE11467
| | Sample_data_row_count | 22215
| | |
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