Search results for the GEO ID: GSE11542  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM290649 | GPL1355 |
|
28133 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
28133 MTS Mix 1
|
| Sample_geo_accession | GSM290649
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290649/suppl/GSM290649.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290650 | GPL1355 |
|
29001 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
29001 MTS Mix 1
|
| Sample_geo_accession | GSM290650
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290650/suppl/GSM290650.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290651 | GPL1355 |
|
29003 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
29003 MTS Mix 1
|
| Sample_geo_accession | GSM290651
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290651/suppl/GSM290651.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290652 | GPL1355 |
|
29487 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
29487 MTS Mix 1
|
| Sample_geo_accession | GSM290652
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290652/suppl/GSM290652.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290653 | GPL1355 |
|
29549 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
29549 MTS Mix 1
|
| Sample_geo_accession | GSM290653
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290653/suppl/GSM290653.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290654 | GPL1355 |
|
29617 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
29617 MTS Mix 1
|
| Sample_geo_accession | GSM290654
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290654/suppl/GSM290654.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290655 | GPL1355 |
|
29684 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
29684 MTS Mix 1
|
| Sample_geo_accession | GSM290655
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290655/suppl/GSM290655.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290656 | GPL1355 |
|
29757 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
29757 MTS Mix 1
|
| Sample_geo_accession | GSM290656
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290656/suppl/GSM290656.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290657 | GPL1355 |
|
30282 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
30282 MTS Mix 1
|
| Sample_geo_accession | GSM290657
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290657/suppl/GSM290657.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290658 | GPL1355 |
|
30821 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
30821 MTS Mix 1
|
| Sample_geo_accession | GSM290658
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290658/suppl/GSM290658.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290659 | GPL1355 |
|
31002 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
31002 MTS Mix 1
|
| Sample_geo_accession | GSM290659
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290659/suppl/GSM290659.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290660 | GPL1355 |
|
31741 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
31741 MTS Mix 1
|
| Sample_geo_accession | GSM290660
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290660/suppl/GSM290660.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290661 | GPL1355 |
|
32240 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
32240 MTS Mix 1
|
| Sample_geo_accession | GSM290661
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290661/suppl/GSM290661.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290662 | GPL1355 |
|
34148 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
34148 MTS Mix 1
|
| Sample_geo_accession | GSM290662
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290662/suppl/GSM290662.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290663 | GPL1355 |
|
34250 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
34250 MTS Mix 1
|
| Sample_geo_accession | GSM290663
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290663/suppl/GSM290663.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290664 | GPL1355 |
|
34914 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
34914 MTS Mix 1
|
| Sample_geo_accession | GSM290664
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290664/suppl/GSM290664.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290665 | GPL1355 |
|
34938 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
34938 MTS Mix 1
|
| Sample_geo_accession | GSM290665
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290665/suppl/GSM290665.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290666 | GPL1355 |
|
35317 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
35317 MTS Mix 1
|
| Sample_geo_accession | GSM290666
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290666/suppl/GSM290666.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290667 | GPL1355 |
|
36020 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
36020 MTS Mix 1
|
| Sample_geo_accession | GSM290667
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290667/suppl/GSM290667.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290668 | GPL1355 |
|
36779 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
36779 MTS Mix 1
|
| Sample_geo_accession | GSM290668
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290668/suppl/GSM290668.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290669 | GPL1355 |
|
37323 MTS Mix 1
|
Rat Mixed Tissue Sample, Mix 1
|
3:2:1:4
|
37323 MTS Mix 1
|
| Sample_geo_accession | GSM290669
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290669/suppl/GSM290669.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290670 | GPL1355 |
|
28141 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
28141 MTS Mix 2
|
| Sample_geo_accession | GSM290670
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290670/suppl/GSM290670.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290671 | GPL1355 |
|
28914 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
28914 MTS Mix 2
|
| Sample_geo_accession | GSM290671
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290671/suppl/GSM290671.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290672 | GPL1355 |
|
29014 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
29014 MTS Mix 2
|
| Sample_geo_accession | GSM290672
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290672/suppl/GSM290672.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290673 | GPL1355 |
|
29488 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
29488 MTS Mix 2
|
| Sample_geo_accession | GSM290673
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290673/suppl/GSM290673.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290674 | GPL1355 |
|
29539 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
29539 MTS Mix 2
|
| Sample_geo_accession | GSM290674
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290674/suppl/GSM290674.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290675 | GPL1355 |
|
29605 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
29605 MTS Mix 2
|
| Sample_geo_accession | GSM290675
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290675/suppl/GSM290675.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290676 | GPL1355 |
|
29681 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
29681 MTS Mix 2
|
| Sample_geo_accession | GSM290676
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290676/suppl/GSM290676.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290677 | GPL1355 |
|
29750 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
29750 MTS Mix 2
|
| Sample_geo_accession | GSM290677
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290677/suppl/GSM290677.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290678 | GPL1355 |
|
30255 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
30255 MTS Mix 2
|
| Sample_geo_accession | GSM290678
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290678/suppl/GSM290678.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290679 | GPL1355 |
|
30816 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
30816 MTS Mix 2
|
| Sample_geo_accession | GSM290679
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290679/suppl/GSM290679.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290680 | GPL1355 |
|
31014 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
31014 MTS Mix 2
|
| Sample_geo_accession | GSM290680
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290680/suppl/GSM290680.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290681 | GPL1355 |
|
31680 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
31680 MTS Mix 2
|
| Sample_geo_accession | GSM290681
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290681/suppl/GSM290681.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290682 | GPL1355 |
|
32237 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
32237 MTS Mix 2
|
| Sample_geo_accession | GSM290682
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290682/suppl/GSM290682.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290683 | GPL1355 |
|
34104 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
34104 MTS Mix 2
|
| Sample_geo_accession | GSM290683
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290683/suppl/GSM290683.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290684 | GPL1355 |
|
34261 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
34261 MTS Mix 2
|
| Sample_geo_accession | GSM290684
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290684/suppl/GSM290684.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290685 | GPL1355 |
|
34856 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
34856 MTS Mix 2
|
| Sample_geo_accession | GSM290685
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290685/suppl/GSM290685.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290686 | GPL1355 |
|
34931 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
34931 MTS Mix 2
|
| Sample_geo_accession | GSM290686
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290686/suppl/GSM290686.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290687 | GPL1355 |
|
35311 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
35311 MTS Mix 2
|
| Sample_geo_accession | GSM290687
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290687/suppl/GSM290687.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290688 | GPL1355 |
|
36018 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
36018 MTS Mix 2
|
| Sample_geo_accession | GSM290688
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290688/suppl/GSM290688.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290689 | GPL1355 |
|
36791 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
36791 MTS Mix 2
|
| Sample_geo_accession | GSM290689
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290689/suppl/GSM290689.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
| | |
|
GSM290690 | GPL1355 |
|
37324 MTS Mix 2
|
Rat Mixed Tissue Sample, Mix 2
|
2:2:4:2
|
37324 MTS Mix 2
|
| Sample_geo_accession | GSM290690
| | Sample_status | Public on May 24 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy maxi kits
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated using the BioArray HighYield RNA Transcript Labeling Kit (Enzo Life Sciences, Farmingdale, NY).
| | Sample_hyb_protocol | To increase hybridization efficiency (~16 h at 45C with rotation at 50rpm), cRNA samples were fragmented according to standard Affymetrix protocols, before being incubated overnight with the GeneChip(r) Rat Genome 230 2.0 Array (Affymetrix, Santa Clara, CA). Arrays were washed and stained using the antibody amplification and staining protocol according to the vendor's instructions.
| | Sample_scan_protocol | Scanned on Affymetrix GeneChip 3000 scanner.
| | Sample_data_processing | cel files were normalized with ‘mas5’ function of the Bioconductor package ‘affy’ in R
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Tiffany,,Day
| | Sample_contact_email | tiffanyd@amgen.com
| | Sample_contact_phone | 805-447-4090
| | Sample_contact_institute | Amgen
| | Sample_contact_address | One Amgen Center Drive
| | Sample_contact_city | Thousand Oaks
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91320-1799
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290690/suppl/GSM290690.cel.gz
| | Sample_series_id | GSE11542
| | Sample_data_row_count | 31099
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