Search results for the GEO ID: GSE11552  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM290910 | GPL570 |
|
untreated cells at 0h, technical rep1
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from untreated, healthy cells
|
| Sample_geo_accession | GSM290910
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290910/suppl/GSM290910.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290911 | GPL570 |
|
untreated cells at 0h, technical rep2
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from untreated, healthy cells
|
| Sample_geo_accession | GSM290911
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290911/suppl/GSM290911.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290912 | GPL570 |
|
0.01% DMSO treated cells at time 6h, technical rep1
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from vehicle treated, healthy cells
|
| Sample_geo_accession | GSM290912
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290912/suppl/GSM290912.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290913 | GPL570 |
|
0.01% DMSO treated cells at time 6h, technical rep2
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from vehicle treated, healthy cells
|
| Sample_geo_accession | GSM290913
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290913/suppl/GSM290913.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290914 | GPL570 |
|
100nM elesclomol treated cells at time 6h, technical rep1
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290914
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290914/suppl/GSM290914.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290915 | GPL570 |
|
100nM elesclomol treated cells at time 6h, technical rep2
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290915
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290915/suppl/GSM290915.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290916 | GPL570 |
|
250nM paclitaxel treated cells at time 6h, technical rep1
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290916
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290916/suppl/GSM290916.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290917 | GPL570 |
|
250nM paclitaxel treated cells at time 6h, technical rep2
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290917
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290917/suppl/GSM290917.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290918 | GPL570 |
|
100nM elesclomol + 250nM paclitaxel treated cells at time 6h, technical rep1
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290918
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290918/suppl/GSM290918.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290919 | GPL570 |
|
100nM elesclomol + 250nM paclitaxel treated cells at time 6h, technical rep2
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 6
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290919
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290919/suppl/GSM290919.CEL.gz
| | Sample_series_id | GSE11550
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290920 | GPL570 |
|
0.01% DMSO treated cells at time 6h, technical rep1.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from vehicle treated, healthy cells
|
| Sample_geo_accession | GSM290920
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290920/suppl/GSM290920.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290921 | GPL570 |
|
0.01% DMSO treated cells at time 6h, technical rep2.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from vehicle treated, healthy cells
|
| Sample_geo_accession | GSM290921
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290921/suppl/GSM290921.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290922 | GPL570 |
|
100nM elesclomol treated cells at time 6h, technical rep1.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290922
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290922/suppl/GSM290922.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290923 | GPL570 |
|
100nM elesclomol treated cells at time 6h, technical rep2.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290923
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290923/suppl/GSM290923.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290924 | GPL570 |
|
5mM NAC treated cells at time 6h, technical rep1.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290924
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290924/suppl/GSM290924.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290925 | GPL570 |
|
5mM NAC treated cells at time 6h, technical rep2.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290925
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290925/suppl/GSM290925.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290926 | GPL570 |
|
100nM elesclomol + 5mM NAC treated cells at time 6h, technical rep1.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290926
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290926/suppl/GSM290926.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
|
GSM290927 | GPL570 |
|
100nM elesclomol + 5mM NAC treated cells at time 6h, technical rep2.
|
cryopreserved cells ordered from ATCC.org
|
Hs 294T cell line
Human Melanoma
passage 11
|
Gene expression data from drug treated cells
|
| Sample_geo_accession | GSM290927
| | Sample_status | Public on May 29 2008
| | Sample_submission_date | May 23 2008
| | Sample_last_update_date | May 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 3x10^6 cells/treatment were plated at a density of approx. 17,637cells/cm^2 and incubated for 3h prior to treatment. Pretreated with 5mM NAC for 30 min, as appropriate. Harvested after 6 h of treatment.
| | Sample_growth_protocol_ch1 | Cells acquired from ATCC. Grown in vitro in 10% serum DMEM media.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | QIAGEN Rneasy Mini Kit (#74106) was used for extraction according to the manufacturers instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jane,Frances,Kepros
| | Sample_contact_email | jane.kepros.2003@alum.bu.edu
| | Sample_contact_department | Biology
| | Sample_contact_institute | Synta Pharmaceuticals Corp.
| | Sample_contact_address | 45 Hartwell Ave
| | Sample_contact_city | Lexington
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02421
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM290nnn/GSM290927/suppl/GSM290927.CEL.gz
| | Sample_series_id | GSE11551
| | Sample_series_id | GSE11552
| | Sample_data_row_count | 54675
| | |
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