Search results for the GEO ID: GSE11557 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM291121 | GPL1261 |
|
HSC-wildtype-1
|
hematopoietic stem cells transduced with control
|
Strain:C57BL/6
Gender:male
Age:8 weeks
|
Lineage(-), Sca-1(+), c-Kit(+) cells derived from Evi-1(flox/flox) mice were transduced with GFP (control) or Cre-GFP expressing retroviruses. Total RNA was prepared from sorted GFP(+) cells.
|
Sample_geo_accession | GSM291121
| Sample_status | Public on May 29 2008
| Sample_submission_date | May 26 2008
| Sample_last_update_date | May 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from sorted cells using RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer's instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin-labeled cDNA probes were prepared using the NuGen Ovation Biotin labeling system (NuGEN Technologies, Inc.), according to the manufacturer's protocol.
| Sample_hyb_protocol | Following fragmentation, Biotin-labeled cDNA was hybridized to the Mouse Genome 430 2.0 Array® (Affymetrix®) for 16 h at 45°C as recommended by the manufacturer. Washing was performed using an automated fluidics workstation, and the array was immediately scanned with GeneChip Scanner 3000 7G.
| Sample_scan_protocol | The array was scanned with GeneChip Scanner 3000 7G.
| Sample_data_processing | Expression data were extracted from image files produced on Affymetrix® GeneChip Operating Software 1.0® (GCOS®).
| Sample_platform_id | GPL1261
| Sample_contact_name | Susumu,,Goyama
| Sample_contact_email | sgou-tky@umin.net
| Sample_contact_department | Hematology
| Sample_contact_institute | Tokyo University
| Sample_contact_address | 7-3-1 Hongo, Bunkyo-ku
| Sample_contact_city | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291121/suppl/GSM291121.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291121/suppl/GSM291121.CHP.gz
| Sample_series_id | GSE11557
| Sample_data_row_count | 45101
| |
|
GSM291123 | GPL1261 |
|
HSC-wildtype-2
|
hematopoietic stem cells transduced with control
|
Strain:C57BL/6
Gender:male
Age:8 weeks
|
Lineage(-), Sca-1(+), c-Kit(+) cells derived from Evi-1(flox/flox) mice were transduced with GFP (control) or Cre-GFP expressing retroviruses. Total RNA was prepared from sorted GFP(+) cells.
|
Sample_geo_accession | GSM291123
| Sample_status | Public on May 29 2008
| Sample_submission_date | May 26 2008
| Sample_last_update_date | May 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from sorted cells using RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer's instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin-labeled cDNA probes were prepared using the NuGen Ovation Biotin labeling system (NuGEN Technologies, Inc.), according to the manufacturer's protocol.
| Sample_hyb_protocol | Following fragmentation, Biotin-labeled cDNA was hybridized to the Mouse Genome 430 2.0 Array® (Affymetrix®) for 16 h at 45°C as recommended by the manufacturer. Washing was performed using an automated fluidics workstation, and the array was immediately scanned with GeneChip Scanner 3000 7G.
| Sample_scan_protocol | The array was scanned with GeneChip Scanner 3000 7G.
| Sample_data_processing | Expression data were extracted from image files produced on Affymetrix® GeneChip Operating Software 1.0® (GCOS®).
| Sample_platform_id | GPL1261
| Sample_contact_name | Susumu,,Goyama
| Sample_contact_email | sgou-tky@umin.net
| Sample_contact_department | Hematology
| Sample_contact_institute | Tokyo University
| Sample_contact_address | 7-3-1 Hongo, Bunkyo-ku
| Sample_contact_city | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291123/suppl/GSM291123.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291123/suppl/GSM291123.CHP.gz
| Sample_series_id | GSE11557
| Sample_data_row_count | 45101
| |
|
GSM291125 | GPL1261 |
|
HSC-Evi1-KO-1
|
hematopoietic stem cells transduced with Cre
|
Strain:C57BL/6
Gender:male
Age:8 weeks
|
Lineage(-), Sca-1(+), c-Kit(+) cells derived from Evi-1(flox/flox) mice were transduced with GFP (control) or Cre-GFP expressing retroviruses. Total RNA was prepared from sorted GFP(+) cells.
|
Sample_geo_accession | GSM291125
| Sample_status | Public on May 29 2008
| Sample_submission_date | May 26 2008
| Sample_last_update_date | May 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from sorted cells using RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer's instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin-labeled cDNA probes were prepared using the NuGen Ovation Biotin labeling system (NuGEN Technologies, Inc.), according to the manufacturer's protocol.
| Sample_hyb_protocol | Following fragmentation, Biotin-labeled cDNA was hybridized to the Mouse Genome 430 2.0 Array® (Affymetrix®) for 16 h at 45°C as recommended by the manufacturer. Washing was performed using an automated fluidics workstation, and the array was immediately scanned with GeneChip Scanner 3000 7G.
| Sample_scan_protocol | The array was scanned with GeneChip Scanner 3000 7G.
| Sample_data_processing | Expression data were extracted from image files produced on Affymetrix® GeneChip Operating Software 1.0® (GCOS®).
| Sample_platform_id | GPL1261
| Sample_contact_name | Susumu,,Goyama
| Sample_contact_email | sgou-tky@umin.net
| Sample_contact_department | Hematology
| Sample_contact_institute | Tokyo University
| Sample_contact_address | 7-3-1 Hongo, Bunkyo-ku
| Sample_contact_city | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291125/suppl/GSM291125.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291125/suppl/GSM291125.CHP.gz
| Sample_series_id | GSE11557
| Sample_data_row_count | 45101
| |
|
GSM291127 | GPL1261 |
|
HSC-Evi1-KO-2
|
hematopoietic stem cells transduced with Cre
|
Strain:C57BL/6
Gender:male
Age:8 weeks
|
Lineage(-), Sca-1(+), c-Kit(+) cells derived from Evi-1(flox/flox) mice were transduced with GFP (control) or Cre-GFP expressing retroviruses. Total RNA was prepared from sorted GFP(+) cells.
|
Sample_geo_accession | GSM291127
| Sample_status | Public on May 29 2008
| Sample_submission_date | May 26 2008
| Sample_last_update_date | May 28 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from sorted cells using RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer's instruction.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin-labeled cDNA probes were prepared using the NuGen Ovation Biotin labeling system (NuGEN Technologies, Inc.), according to the manufacturer's protocol.
| Sample_hyb_protocol | Following fragmentation, Biotin-labeled cDNA was hybridized to the Mouse Genome 430 2.0 Array® (Affymetrix®) for 16 h at 45°C as recommended by the manufacturer. Washing was performed using an automated fluidics workstation, and the array was immediately scanned with GeneChip Scanner 3000 7G.
| Sample_scan_protocol | The array was scanned with GeneChip Scanner 3000 7G.
| Sample_data_processing | Expression data were extracted from image files produced on Affymetrix® GeneChip Operating Software 1.0® (GCOS®).
| Sample_platform_id | GPL1261
| Sample_contact_name | Susumu,,Goyama
| Sample_contact_email | sgou-tky@umin.net
| Sample_contact_department | Hematology
| Sample_contact_institute | Tokyo University
| Sample_contact_address | 7-3-1 Hongo, Bunkyo-ku
| Sample_contact_city | Tokyo
| Sample_contact_zip/postal_code | 113-8655
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291127/suppl/GSM291127.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM291nnn/GSM291127/suppl/GSM291127.CHP.gz
| Sample_series_id | GSE11557
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|