Search results for the GEO ID: GSE11581  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM292136 | GPL570 |
|
FAKsiRNA, rep1
|
human breast cancer cell line, MCF-7, FAKsiRNA
|
FAKsiRNA#1
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Gene expression data from FAKsiRNA
|
| Sample_geo_accession | GSM292136
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FAKsiRNA stable cell lines, hygromycin-resistant
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip U133_plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were normalized with RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292136/suppl/GSM292136.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
| | |
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GSM292137 | GPL570 |
|
FAKsiRNA, rep2
|
human breast cancer cell line, MCF-7, FAKsiRNA
|
FAKsiRNA#2
|
Gene expression data from FAKsiRNA
|
| Sample_geo_accession | GSM292137
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FAKsiRNA stable cell lines, hygromycin-resistant
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip U133_plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were normalized with RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292137/suppl/GSM292137.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
| | |
|
GSM292138 | GPL570 |
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MCF7
|
human breast cancer cell line, MCF-7
|
MCF7
|
Gene expression data from MCF7
|
| Sample_geo_accession | GSM292138
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF7
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip U133_plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were normalized with RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292138/suppl/GSM292138.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
| | |
|
GSM292139 | GPL570 |
|
MCF7 vector control
|
human breast cancer cell line, MCF-7-Vector
|
MCF-7-Vector
|
Gene expression data from MCF7 vector control
|
| Sample_geo_accession | GSM292139
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF-7-Vector
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip U133_plus2 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were normalized with RMA algorithm.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292139/suppl/GSM292139.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
| | |
|
GSM318854 | GPL570 |
|
FAKsiRNA, rep3
|
human breast cancer cell line, MCF-7, FAKsiRNA
|
FAKsiRNA#1
|
Gene expression data from FAKsiRNA
|
| Sample_geo_accession | GSM318854
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FAKsiRNA stable cell lines, hygromycin-resistant
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotiylated cRNA was prepared according to the manufacturer's protocol using the MessageAmpII-Biotin Enhanced Amplification system (Ambion) from 1ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16hr at 45C on GeneChip Human Genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318854/suppl/GSM318854.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
| | |
|
GSM318855 | GPL570 |
|
FAKsiRNA, rep4
|
human breast cancer cell line, MCF-7, FAKsiRNA
|
FAKsiRNA#2
|
Gene expression data from FAKsiRNA
|
| Sample_geo_accession | GSM318855
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FAKsiRNA stable cell lines, hygromycin-resistant
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotiylated cRNA was prepared according to the manufacturer's protocol using the MessageAmpII-Biotin Enhanced Amplification system (Ambion) from 1ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16hr at 45C on GeneChip Human Genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318855/suppl/GSM318855.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
| | |
|
GSM318856 | GPL570 |
|
MCF7 siRNA control
|
human breast cancer cell line, MCF-7, siRNA control
|
MCF7 siRNA control
|
Gene expression data from MCF7 siRNA control
|
| Sample_geo_accession | GSM318856
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | siRNA control
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotiylated cRNA was prepared according to the manufacturer's protocol using the MessageAmpII-Biotin Enhanced Amplification system (Ambion) from 1ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16hr at 45C on GeneChip Human Genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318856/suppl/GSM318856.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
| | |
|
GSM318859 | GPL570 |
|
MCF7 vector control, rep2
|
human breast cancer cell line, MCF-7, vector control
|
MCF-7-Vector
|
Gene expression data from MCF7 vector control
|
| Sample_geo_accession | GSM318859
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Aug 17 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF-7-Vector
| | Sample_growth_protocol_ch1 | Cell lines were cultivated according ATCC protocol, stable cell lines hyg-resistant
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Invitrogen Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotiylated cRNA was prepared according to the manufacturer's protocol using the MessageAmpII-Biotin Enhanced Amplification system (Ambion) from 1ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 15ug of cRNA were hybridized for 16hr at 45C on GeneChip Human Genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were normalized with RMA algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Vita,M,Golubovskaya
| | Sample_contact_email | golubvi@surgery.ufl.edu
| | Sample_contact_phone | 352-2738074
| | Sample_contact_fax | 352-273-8299
| | Sample_contact_laboratory | surgery
| | Sample_contact_department | Surgery
| | Sample_contact_institute | university of florida, Shands Cancer Center
| | Sample_contact_address | 1376 Mowry Road
| | Sample_contact_city | Gainesville
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 32610
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318859/suppl/GSM318859.CEL.gz
| | Sample_series_id | GSE11581
| | Sample_data_row_count | 54675
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