Search results for the GEO ID: GSE11591  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM292061 | GPL1261 |
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Lrg47_HSC_1
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Hematopoietic stem cells (HSCs) isolated from Lrg-47-/- mutant mice
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C57BL/6, Age: 8-12 weeks, Tissue: hematopoietic stem cells from whole bone marrow
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Lrg47_HSC_1
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| Sample_geo_accession | GSM292061
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Jun 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole bone marrow was extracted and HSCs were isolated by FACS using Hoechst 33342 staining to identify the side population, in addition to Sca-1, c-kit, and Lineage staining.
| | Sample_growth_protocol_ch1 | Mice were maintained at a specific pathogen-free facility.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Ambion RNAqueous kit, treated with DNaseI, and linearly amplified using two rounds of T7-based in vitro transcription with the Ambion MessageAmp kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with biotin-conjugated UTP and CTP.
| | Sample_hyb_protocol | Manufacturer's (Affymetrix) standard protocol
| | Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip Scanner 3000. Raw image and intensity files were generated using the GCOS 1.0 software (Affymetrix).
| | Sample_data_processing | Normalization and model-based expression measurements were performed in R with GC-RMA.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Megan,,Baldridge
| | Sample_contact_email | mt144216@gmail.com
| | Sample_contact_laboratory | Margaret A. Goodell
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292061/suppl/GSM292061.CEL.gz
| | Sample_series_id | GSE11591
| | Sample_data_row_count | 45101
| | |
|
GSM292062 | GPL1261 |
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Lrg47_HSC_2
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Hematopoietic stem cells (HSCs) isolated from Lrg-47-/- mutant mice
|
C57BL/6, Age: 8-12 weeks, Tissue: hematopoietic stem cells from whole bone marrow
|
Lrg47_HSC_2
|
| Sample_geo_accession | GSM292062
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Jun 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole bone marrow was extracted and HSCs were isolated by FACS using Hoechst 33342 staining to identify the side population, in addition to Sca-1, c-kit, and Lineage staining.
| | Sample_growth_protocol_ch1 | Mice were maintained at a specific pathogen-free facility.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Ambion RNAqueous kit, treated with DNaseI, and linearly amplified using two rounds of T7-based in vitro transcription with the Ambion MessageAmp kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with biotin-conjugated UTP and CTP.
| | Sample_hyb_protocol | Manufacturer's (Affymetrix) standard protocol
| | Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip Scanner 3000. Raw image and intensity files were generated using the GCOS 1.0 software (Affymetrix).
| | Sample_data_processing | Normalization and model-based expression measurements were performed in R with GC-RMA.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Megan,,Baldridge
| | Sample_contact_email | mt144216@gmail.com
| | Sample_contact_laboratory | Margaret A. Goodell
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292062/suppl/GSM292062.CEL.gz
| | Sample_series_id | GSE11591
| | Sample_data_row_count | 45101
| | |
|
GSM292063 | GPL1261 |
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Lrg47_HSC_3
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Hematopoietic stem cells (HSCs) isolated from Lrg-47-/- mutant mice
|
C57BL/6, Age: 8-12 weeks, Tissue: hematopoietic stem cells from whole bone marrow
|
Lrg47_HSC_3
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| Sample_geo_accession | GSM292063
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Jun 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole bone marrow was extracted and HSCs were isolated by FACS using Hoechst 33342 staining to identify the side population, in addition to Sca-1, c-kit, and Lineage staining.
| | Sample_growth_protocol_ch1 | Mice were maintained at a specific pathogen-free facility.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Ambion RNAqueous kit, treated with DNaseI, and linearly amplified using two rounds of T7-based in vitro transcription with the Ambion MessageAmp kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with biotin-conjugated UTP and CTP.
| | Sample_hyb_protocol | Manufacturer's (Affymetrix) standard protocol
| | Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip Scanner 3000. Raw image and intensity files were generated using the GCOS 1.0 software (Affymetrix).
| | Sample_data_processing | Normalization and model-based expression measurements were performed in R with GC-RMA.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Megan,,Baldridge
| | Sample_contact_email | mt144216@gmail.com
| | Sample_contact_laboratory | Margaret A. Goodell
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292063/suppl/GSM292063.CEL.gz
| | Sample_series_id | GSE11591
| | Sample_data_row_count | 45101
| | |
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GSM292064 | GPL1261 |
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WT_HSC_1
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Hematopoietic stem cells (HSCs) isolated from wild-type mice
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C57BL/6, Age: 8-12 weeks, Tissue: hematopoietic stem cells from whole bone marrow
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WT_HSC_1
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| Sample_geo_accession | GSM292064
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Jun 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole bone marrow was extracted and HSCs were isolated by FACS using Hoechst 33342 staining to identify the side population, in addition to Sca-1, c-kit, and Lineage staining.
| | Sample_growth_protocol_ch1 | Mice were maintained at a specific pathogen-free facility.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Ambion RNAqueous kit, treated with DNaseI, and linearly amplified using two rounds of T7-based in vitro transcription with the Ambion MessageAmp kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with biotin-conjugated UTP and CTP.
| | Sample_hyb_protocol | Manufacturer's (Affymetrix) standard protocol
| | Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip Scanner 3000. Raw image and intensity files were generated using the GCOS 1.0 software (Affymetrix).
| | Sample_data_processing | Normalization and model-based expression measurements were performed in R with GC-RMA.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Megan,,Baldridge
| | Sample_contact_email | mt144216@gmail.com
| | Sample_contact_laboratory | Margaret A. Goodell
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292064/suppl/GSM292064.CEL.gz
| | Sample_series_id | GSE11591
| | Sample_data_row_count | 45101
| | |
|
GSM292065 | GPL1261 |
|
WT_HSC_2
|
Hematopoietic stem cells (HSCs) isolated from wild-type mice
|
C57BL/6, Age: 8-12 weeks, Tissue: hematopoietic stem cells from whole bone marrow
|
WT_HSC_2
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| Sample_geo_accession | GSM292065
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Jun 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole bone marrow was extracted and HSCs were isolated by FACS using Hoechst 33342 staining to identify the side population, in addition to Sca-1, c-kit, and Lineage staining.
| | Sample_growth_protocol_ch1 | Mice were maintained at a specific pathogen-free facility.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Ambion RNAqueous kit, treated with DNaseI, and linearly amplified using two rounds of T7-based in vitro transcription with the Ambion MessageAmp kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with biotin-conjugated UTP and CTP.
| | Sample_hyb_protocol | Manufacturer's (Affymetrix) standard protocol
| | Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip Scanner 3000. Raw image and intensity files were generated using the GCOS 1.0 software (Affymetrix).
| | Sample_data_processing | Normalization and model-based expression measurements were performed in R with GC-RMA.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Megan,,Baldridge
| | Sample_contact_email | mt144216@gmail.com
| | Sample_contact_laboratory | Margaret A. Goodell
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292065/suppl/GSM292065.CEL.gz
| | Sample_series_id | GSE11591
| | Sample_data_row_count | 45101
| | |
|
GSM292066 | GPL1261 |
|
WT_HSC_3
|
Hematopoietic stem cells (HSCs) isolated from wild-type mice
|
C57BL/6, Age: 8-12 weeks, Tissue: hematopoietic stem cells from whole bone marrow
|
WT_HSC_3
|
| Sample_geo_accession | GSM292066
| | Sample_status | Public on Jun 23 2011
| | Sample_submission_date | May 29 2008
| | Sample_last_update_date | Jun 24 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Whole bone marrow was extracted and HSCs were isolated by FACS using Hoechst 33342 staining to identify the side population, in addition to Sca-1, c-kit, and Lineage staining.
| | Sample_growth_protocol_ch1 | Mice were maintained at a specific pathogen-free facility.
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with the Ambion RNAqueous kit, treated with DNaseI, and linearly amplified using two rounds of T7-based in vitro transcription with the Ambion MessageAmp kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with biotin-conjugated UTP and CTP.
| | Sample_hyb_protocol | Manufacturer's (Affymetrix) standard protocol
| | Sample_scan_protocol | Arrays were scanned using the Affymetrix GeneChip Scanner 3000. Raw image and intensity files were generated using the GCOS 1.0 software (Affymetrix).
| | Sample_data_processing | Normalization and model-based expression measurements were performed in R with GC-RMA.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Megan,,Baldridge
| | Sample_contact_email | mt144216@gmail.com
| | Sample_contact_laboratory | Margaret A. Goodell
| | Sample_contact_department | Molecular and Human Genetics
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM292nnn/GSM292066/suppl/GSM292066.CEL.gz
| | Sample_series_id | GSE11591
| | Sample_data_row_count | 45101
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