Search results for the GEO ID: GSE11622  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM294924 | GPL342 |
|
Rat_Vagina_Veh_5Days_rep1
|
Vaginal tissue from OVX rats treated with vehicle for 5 days
|
Rat_Vagina_Veh_5Days_rep1
|
230bA1V
|
| Sample_geo_accession | GSM294924
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294924/suppl/GSM294924.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294925 | GPL342 |
|
Rat_Vagina_Veh_5Days_rep2
|
Vaginal tissue from OVX rats treated with vehicle for 5 days
|
Rat_Vagina_Veh_5Days_rep2
|
230bA2V
|
| Sample_geo_accession | GSM294925
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294925/suppl/GSM294925.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294926 | GPL342 |
|
Rat_Vagina_Veh_5Days_rep3
|
Vaginal tissue from OVX rats treated with vehicle for 5 days
|
Rat_Vagina_Veh_5Days_rep3
|
230bA4V
|
| Sample_geo_accession | GSM294926
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294926/suppl/GSM294926.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294927 | GPL342 |
|
Rat_Vagina_Veh_5Days_rep4
|
Vaginal tissue from OVX rats treated with vehicle for 5 days
|
Rat_Vagina_Veh_5Days_rep4
|
230bA5V
|
| Sample_geo_accession | GSM294927
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294927/suppl/GSM294927.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294928 | GPL342 |
|
Rat_Vagina_Veh_5Days_rep5
|
Vaginal tissue from OVX rats treated with vehicle for 5 days
|
Rat_Vagina_Veh_5Days_rep5
|
230bA3V
|
| Sample_geo_accession | GSM294928
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294928/suppl/GSM294928.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294929 | GPL342 |
|
Rat_Vagina_E2_5Days_rep1
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 5 days
|
Rat_Vagina_E2_5Days_rep1
|
230bB4E
|
| Sample_geo_accession | GSM294929
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294929/suppl/GSM294929.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294930 | GPL342 |
|
Rat_Vagina_E2_5Days_rep2
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 5 days
|
Rat_Vagina_E2_5Days_rep2
|
230bB1E
|
| Sample_geo_accession | GSM294930
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294930/suppl/GSM294930.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294931 | GPL342 |
|
Rat_Vagina_E2_5Days_rep3
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 5 days
|
Rat_Vagina_E2_5Days_rep3
|
230bB3E
|
| Sample_geo_accession | GSM294931
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294931/suppl/GSM294931.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294932 | GPL342 |
|
Rat_Vagina_E2_5Days_rep4
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 5 days
|
Rat_Vagina_E2_5Days_rep4
|
230bB2E
|
| Sample_geo_accession | GSM294932
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294932/suppl/GSM294932.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294933 | GPL342 |
|
Rat_Vagina_E2_5Days_rep5
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 5 days
|
Rat_Vagina_E2_5Days_rep5
|
230bB5E
|
| Sample_geo_accession | GSM294933
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294933/suppl/GSM294933.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294934 | GPL342 |
|
Rat_Vagina_Veh_3Days_rep1
|
Vaginal tissue from OVX rats treated with vehicle for 3 days
|
Rat_Vagina_Veh_3Days_rep1
|
230bC3V
|
| Sample_geo_accession | GSM294934
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294934/suppl/GSM294934.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294935 | GPL342 |
|
Rat_Vagina_Veh_3Days_rep2
|
Vaginal tissue from OVX rats treated with vehicle for 3 days
|
Rat_Vagina_Veh_3Days_rep2
|
230bC1V
|
| Sample_geo_accession | GSM294935
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294935/suppl/GSM294935.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294936 | GPL342 |
|
Rat_Vagina_Veh_3Days_rep3
|
Vaginal tissue from OVX rats treated with vehicle for 3 days
|
Rat_Vagina_Veh_3Days_rep3
|
230bC5V
|
| Sample_geo_accession | GSM294936
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294936/suppl/GSM294936.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294937 | GPL342 |
|
Rat_Vagina_Veh_3Days_rep4
|
Vaginal tissue from OVX rats treated with vehicle for 3 days
|
Rat_Vagina_Veh_3Days_rep4
|
230bC4V
|
| Sample_geo_accession | GSM294937
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294937/suppl/GSM294937.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294938 | GPL342 |
|
Rat_Vagina_Veh_3Days_rep5
|
Vaginal tissue from OVX rats treated with vehicle for 3 days
|
Rat_Vagina_Veh_3Days_rep5
|
230bC2V
|
| Sample_geo_accession | GSM294938
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294938/suppl/GSM294938.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294939 | GPL342 |
|
Rat_Vagina_E2_3Days_rep1
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 3 days
|
Rat_Vagina_E2_3Days_rep1
|
230bD2E
|
| Sample_geo_accession | GSM294939
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294939/suppl/GSM294939.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294940 | GPL342 |
|
Rat_Vagina_E2_3Days_rep2
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 3 days
|
Rat_Vagina_E2_3Days_rep2
|
230bD4E
|
| Sample_geo_accession | GSM294940
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294940/suppl/GSM294940.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294941 | GPL342 |
|
Rat_Vagina_E2_3Days_rep3
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 3 days
|
Rat_Vagina_E2_3Days_rep3
|
230bD3E
|
| Sample_geo_accession | GSM294941
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294941/suppl/GSM294941.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294942 | GPL342 |
|
Rat_Vagina_E2_3Days_rep4
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 3 days
|
Rat_Vagina_E2_3Days_rep4
|
230bD1E
|
| Sample_geo_accession | GSM294942
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294942/suppl/GSM294942.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294943 | GPL342 |
|
Rat_Vagina_E2_3Days_rep5
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 3 days
|
Rat_Vagina_E2_3Days_rep5
|
230bD5E
|
| Sample_geo_accession | GSM294943
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294943/suppl/GSM294943.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294944 | GPL342 |
|
Rat_Vagina_Veh_6hr_rep1
|
Vaginal tissue from OVX rats treated with vehicle for 6 hours
|
Rat_Vagina_Veh_6hr_rep1
|
230bE2V
|
| Sample_geo_accession | GSM294944
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294944/suppl/GSM294944.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294945 | GPL342 |
|
Rat_Vagina_Veh_6hr_rep2
|
Vaginal tissue from OVX rats treated with vehicle for 6 hours
|
Rat_Vagina_Veh_6hr_rep2
|
230bE4V
|
| Sample_geo_accession | GSM294945
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294945/suppl/GSM294945.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294946 | GPL342 |
|
Rat_Vagina_Veh_6hr_rep3
|
Vaginal tissue from OVX rats treated with vehicle for 6 hours
|
Rat_Vagina_Veh_6hr_rep3
|
230bE5V
|
| Sample_geo_accession | GSM294946
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294946/suppl/GSM294946.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294947 | GPL342 |
|
Rat_Vagina_Veh_6hr_rep4
|
Vaginal tissue from OVX rats treated with vehicle for 6 hours
|
Rat_Vagina_Veh_6hr_rep4
|
230bE3V
|
| Sample_geo_accession | GSM294947
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294947/suppl/GSM294947.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294948 | GPL342 |
|
Rat_Vagina_Veh_6hr_rep5
|
Vaginal tissue from OVX rats treated with vehicle for 6 hours
|
Rat_Vagina_Veh_6hr_rep5
|
230bE1V
|
| Sample_geo_accession | GSM294948
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294948/suppl/GSM294948.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294949 | GPL342 |
|
Rat_Vagina_E2_6hr_rep1
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 6 hours
|
Rat_Vagina_E2_6hr_rep1
|
230bF2E
|
| Sample_geo_accession | GSM294949
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294949/suppl/GSM294949.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294950 | GPL342 |
|
Rat_Vagina_E2_6hr_rep2
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 6 hours
|
Rat_Vagina_E2_6hr_rep2
|
230bF1E
|
| Sample_geo_accession | GSM294950
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294950/suppl/GSM294950.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294951 | GPL342 |
|
Rat_Vagina_E2_6hr_rep3
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 6 hours
|
Rat_Vagina_E2_6hr_rep3
|
230bF4E
|
| Sample_geo_accession | GSM294951
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294951/suppl/GSM294951.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294952 | GPL342 |
|
Rat_Vagina_E2_6hr_rep4
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 6 hours
|
Rat_Vagina_E2_6hr_rep4
|
230bF3E
|
| Sample_geo_accession | GSM294952
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294952/suppl/GSM294952.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
|
GSM294953 | GPL342 |
|
Rat_Vagina_E2_6hr_rep5
|
Vaginal tissue from OVX rats treated 20ug/kg 17estradiol for 6 hours
|
Rat_Vagina_E2_6hr_rep5
|
230bF5E
|
| Sample_geo_accession | GSM294953
| | Sample_status | Public on May 20 2009
| | Sample_submission_date | May 30 2008
| | Sample_last_update_date | May 20 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by Qiagen RNAeasy purification was performed according to the manufacturer's instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip RAE230B arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with GCOS1.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL342
| | Sample_contact_name | Scott,,Jelinsky
| | Sample_contact_email | Scott.Jelinsky@pfizer.com
| | Sample_contact_phone | 617-665-5366
| | Sample_contact_laboratory | Bioresearch
| | Sample_contact_department | Tissue Repair
| | Sample_contact_institute | Pfizer
| | Sample_contact_address | 200 CambridgePark Drive
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02140
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM294nnn/GSM294953/suppl/GSM294953.cel.gz
| | Sample_series_id | GSE11622
| | Sample_data_row_count | 15333
| | |
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