Search results for the GEO ID: GSE11662  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM296175 | GPL1261 |
|
WT-SB replicate1
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296175
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SB
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296175/suppl/GSM296175.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296176 | GPL1261 |
|
WT-SB replicate2
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296176
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SB
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296176/suppl/GSM296176.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296177 | GPL1261 |
|
WT-SB replicate3
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296177
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SB
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296177/suppl/GSM296177.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296178 | GPL1261 |
|
GADD45-/- - SB replicate1
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: GADD45-/-
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296178
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SB
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296178/suppl/GSM296178.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296179 | GPL1261 |
|
GADD45-/- - SB replicate2
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: GADD45-/-
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296179
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SB
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296179/suppl/GSM296179.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296180 | GPL1261 |
|
GADD45-/- - SB replicate3
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: GADD45-/-
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296180
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | SB
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296180/suppl/GSM296180.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296181 | GPL1261 |
|
WT-VILI replicate1
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296181
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | VILI (30 ml/kg tidal volume, 65 breath/minute, 4 hours)
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296181/suppl/GSM296181.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296182 | GPL1261 |
|
WT-VILI replicate2
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296182
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | VILI (30 ml/kg tidal volume, 65 breath/minute, 4 hours)
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296182/suppl/GSM296182.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296183 | GPL1261 |
|
WT-VILI replicate3
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296183
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | VILI (30 ml/kg tidal volume, 65 breath/minute, 4 hours)
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296183/suppl/GSM296183.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296184 | GPL1261 |
|
GADD45-/- -VILI replicate1
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: GADD-/-
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296184
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | VILI (30 ml/kg tidal volume, 65 breath/minute, 4 hours)
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296184/suppl/GSM296184.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296185 | GPL1261 |
|
GADD45-/- -VILI replicate2
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: GADD-/-
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296185
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | VILI (30 ml/kg tidal volume, 65 breath/minute, 4 hours)
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296185/suppl/GSM296185.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
| | |
|
GSM296186 | GPL1261 |
|
GADD45-/- -VILI replicate3
|
Lung
|
Mouse C57BL/6
Mouse, male
Age: 8-12 week
Genotype: GADD-/-
|
Gene expression data from lung tissue of control animal
|
| Sample_geo_accession | GSM296186
| | Sample_status | Public on Jul 01 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Jun 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | VILI (30 ml/kg tidal volume, 65 breath/minute, 4 hours)
| | Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yong,,Huang
| | Sample_contact_email | yongh@uchicago.edu
| | Sample_contact_phone | (773) 834 0832
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 South Maryland Avenue
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296186/suppl/GSM296186.CEL.gz
| | Sample_series_id | GSE11662
| | Sample_data_row_count | 45101
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