Search results for the GEO ID: GSE11664  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM296250 | GPL1261 |
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gene expression of CTCF-depleted oocyte, replicate 1
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CTCF-depleted oocyte
|
CTCF-depleted fully-grown GV oocyte from transgenic mice
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Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296250
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296250/suppl/GSM296250.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296250/suppl/GSM296250.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296251 | GPL1261 |
|
gene expression of CTCF-depleted oocyte, replicate 3
|
CTCF-depleted oocyte
|
CTCF-depleted fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296251
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296251/suppl/GSM296251.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296251/suppl/GSM296251.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296252 | GPL1261 |
|
gene expression of CTCF-depleted oocyte, replicate 4
|
CTCF-depleted oocyte
|
CTCF-depleted fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296252
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296252/suppl/GSM296252.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296252/suppl/GSM296252.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296253 | GPL1261 |
|
gene expression of CTCF-depleted oocyte, replicate 5
|
CTCF-depleted oocyte
|
CTCF-depleted fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296253
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296253/suppl/GSM296253.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296253/suppl/GSM296253.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
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GSM296254 | GPL1261 |
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gene expression of wild type oocyte, replicate 1
|
wild type oocyte
|
Wild type fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296254
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296254/suppl/GSM296254.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296254/suppl/GSM296254.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296255 | GPL1261 |
|
gene expression of wild type oocyte, replicate 2
|
wild type oocyte
|
Wild type fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296255
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296255/suppl/GSM296255.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296255/suppl/GSM296255.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296256 | GPL1261 |
|
gene expression of wild type oocyte, replicate 3
|
wild type oocyte
|
Wild type fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296256
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296256/suppl/GSM296256.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296256/suppl/GSM296256.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296257 | GPL1261 |
|
gene expression of wild type oocyte, replicate 4
|
wild type oocyte
|
Wild type fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296257
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296257/suppl/GSM296257.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296257/suppl/GSM296257.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296259 | GPL1261 |
|
gene expression of wild type oocyte, replicate 5
|
wild type oocyte
|
Wild type fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296259
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296259/suppl/GSM296259.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296259/suppl/GSM296259.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
| | |
|
GSM296261 | GPL1261 |
|
gene expression of CTCF-depleted oocyte, replicate 2
|
CTCF-depleted oocyte
|
CTCF-depleted fully-grown GV oocyte from transgenic mice
|
Gene expression data from CTCF depleted GV oocyte
|
| Sample_geo_accession | GSM296261
| | Sample_status | Public on Jun 05 2008
| | Sample_submission_date | Jun 03 2008
| | Sample_last_update_date | Aug 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted and purified using an Picopure kit (Arcturus).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
| | Sample_hyb_protocol | cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hua,,Pan
| | Sample_contact_email | huapan@sas.upenn.edu
| | Sample_contact_department | Department of Biology
| | Sample_contact_institute | University of Pennsylvania
| | Sample_contact_address | 415 S University Avenue
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296261/suppl/GSM296261.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296261/suppl/GSM296261.cel.gz
| | Sample_series_id | GSE11664
| | Sample_data_row_count | 45101
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