Search results for the GEO ID: GSE11680 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM296708 | GPL1261 |
|
High Exploration: Neuro-28
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from high exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296708
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296708/suppl/GSM296708.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296709 | GPL1261 |
|
High Exploration: Neuro-41
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from high exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296709
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296709/suppl/GSM296709.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296710 | GPL1261 |
|
High Exploration: Neuro-56
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from high exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296710
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296710/suppl/GSM296710.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296711 | GPL1261 |
|
High Exploration: Neuro-58
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from high exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296711
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296711/suppl/GSM296711.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296712 | GPL1261 |
|
High Exploration: Neuro-59
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from high exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296712
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296712/suppl/GSM296712.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296713 | GPL1261 |
|
Low Exploration: Neuro-13
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from low exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296713
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296713/suppl/GSM296713.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296714 | GPL1261 |
|
Low Exploration: Neuro-29
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from low exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296714
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296714/suppl/GSM296714.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296715 | GPL1261 |
|
Low Exploration: Neuro-30
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from low exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296715
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296715/suppl/GSM296715.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296716 | GPL1261 |
|
Low Exploration: Neuro-42
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from low exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296716
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296716/suppl/GSM296716.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
|
GSM296717 | GPL1261 |
|
Low Exploration: Neuro-45
|
whole hippocampus
|
Balb c/J 12 week old females
|
Gene expression data from low exploratory Balb c/J females
female balb c/J mice obtained from Jackson and born on the same day were characterized over multiple days and lighting condition:s in the open field behavioir. Animals were ranked based on the composite behavior (average mean normalized behavior across multiple days and multiple open-field measures:center ambulation:, percent path center, center time, center entries, and total ambulation:.
|
Sample_geo_accession | GSM296717
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Jun 04 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA/DNA columns per manufacturers instruction:s.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation:, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse 430_2.0 expression array.
| Sample_scan_protocol | Affymetrix Mouuse 430_2.0 Array scanned on Affymetrix’s GeneChip Scanner 3000 7G and reviewed for quality control.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization: method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| Sample_platform_id | GPL1261
| Sample_contact_name | mark,,alter
| Sample_contact_email | markalter1968@gmail.com
| Sample_contact_department | Center for Neurobiology and Behvior
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 125 S. 31st Street
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19003
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296717/suppl/GSM296717.CEL.gz
| Sample_series_id | GSE11680
| Sample_data_row_count | 45101
| |
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